#---------------------------------------------------- #Date Time : 05/11/2016 13:08:13 #-N : SRR097861 #-i : #-j : #-ij : /Users/azofeifa/bidirectional_hits_all/bedgraph_files_mouse/SRR097861.fastqbowtie2.sorted.BedGraph #-k : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/SRR097861-1_prelim_bidir_hits.bed #-o : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/ #-ns : 100 #-br : 15 #-bct : 1.0 #-elon : 0 #-pad : 2000 #-minK : 1 #-maxK : 1 #-ms_pen : 1 #-mi : 2000 #-ct : 0.0001 #-rounds : 32 #-ALPHA_0 : 10 #-BETA_0 : 10 #-BETA_1 : 100 #-ALPHA_2 : 1 #-ALPHA_3 : 100 #---------------------------------------------------- chr1 5130162 5130239 ME_25|5130201.104020,18.252269,20.000000,0.028830,249.952754,0.998464,0.000309,0.000311,5133394.000000,5127857.000000 chr1 12771986 12772359 ME_14|12772173.062992,64.557268,121.915600,0.373490,3.206313,0.931010,0.013543,0.014819,12774874.000000,12770072.000000 chr1 46342273 46342398 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ME_403|141006911.297406,71.118871,134.392430,0.602824,5.887604,0.912484,0.018359,0.017289,141008989.000000,141004682.000000 chr7 141539673 141540126 ME_410|141539900.128386,79.309705,147.324090,0.569853,44.243529,0.892616,0.023425,0.021240,141542029.000000,141537662.000000 chr8 3567610 3568043 ME_420|3567827.256868,74.649243,141.777881,0.604512,250.000000,0.914164,0.020826,0.016332,3570168.000000,3565426.000000 chr8 11555554 11555977 ME_417|11555766.022865,64.915904,146.143925,0.632536,250.000000,0.938091,0.022208,0.011213,11558133.000000,11553136.000000 chr8 13785604 13786131 ME_424|13785868.224481,90.266379,173.332233,0.501778,54.332834,0.819611,0.017406,0.115283,13788033.000000,13783726.000000 chr8 19784334 19784808 ME_425|19784571.396916,81.270979,155.827066,0.571314,9.952330,0.740231,0.178725,0.020333,19786653.000000,19782271.000000 chr8 22350732 22351087 ME_428|22350910.475682,61.714959,115.793821,0.360045,7.866126,0.939299,0.011929,0.012986,22353693.000000,22348801.000000 chr8 25597107 25597628 ME_433|25597368.195371,89.515457,171.125611,0.548407,250.000000,0.830451,0.030626,0.064649,25599678.000000,25595401.000000 chr8 31168548 31169003 ME_430|31168775.934263,77.902161,149.690452,0.413117,33.411870,0.666595,0.014716,0.274698,31171188.000000,31166641.000000 chr8 34152018 34152088 ME_436|34152053.310911,14.823269,20.000000,0.060764,249.969989,0.996570,0.000688,0.000692,34155228.000000,34149706.000000 chr8 46021023 46021231 ME_421|46021127.186321,38.663179,65.213175,0.775129,11.827013,0.979872,0.004176,0.003988,46023243.000000,46018246.000000 chr8 56777627 56777944 ME_418|56777786.335221,55.595649,102.969101,0.331414,14.905386,0.952914,0.009275,0.009985,56780568.000000,56775660.000000 chr8 71922664 71923108 ME_426|71922886.417858,78.512998,143.742298,0.489807,140.685297,0.898339,0.021248,0.021373,71925138.000000,71920636.000000 chr8 84662686 84663097 ME_435|84662892.384030,70.081991,135.393811,0.384121,14.218728,0.597171,0.117823,0.255827,84665433.000000,84660796.000000 chr8 84846855 84847162 ME_429|84847009.011810,53.236151,100.457064,0.326819,120.122387,0.940583,0.007926,0.027812,84849783.000000,84844786.000000 chr8 85034467 85034972 ME_423|85034719.838702,74.671755,177.705125,0.612933,11.752023,0.648094,0.309241,0.010967,85036833.000000,85032241.000000 chr8 88279973 88280171 ME_432|88280072.193793,36.982705,62.146206,0.216151,4.686488,0.980759,0.004186,0.003899,88283268.000000,88277971.000000 chr8 94098332 94098735 ME_422|94098533.631410,69.970279,131.639486,0.609051,24.017479,0.918297,0.017020,0.016171,94100628.000000,94096081.000000 chr8 94703939 94704319 ME_427|94704129.244446,65.825834,124.143366,0.360070,15.955477,0.939534,0.011935,0.012727,94706808.000000,94702021.000000 chr8 110630712 110631538 ME_431|110631125.641909,265.587401,147.683965,0.252054,250.000000,0.975992,0.004623,0.005658,110633913.000000,110628586.000000 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