#---------------------------------------------------- #Date Time : 05/11/2016 13:09:03 #-N : SRR1517781 #-i : #-j : #-ij : /Users/azofeifa/bidirectional_hits_all/bedgraph_files_mouse/SRR1517781.fastqbowtie2.sorted.BedGraph #-k : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/SRR1517781-1_prelim_bidir_hits.bed #-o : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/ #-ns : 100 #-br : 15 #-bct : 1.0 #-elon : 0 #-pad : 2000 #-minK : 1 #-maxK : 1 #-ms_pen : 1 #-mi : 2000 #-ct : 0.0001 #-rounds : 32 #-ALPHA_0 : 10 #-BETA_0 : 10 #-BETA_1 : 100 #-ALPHA_2 : 1 #-ALPHA_3 : 100 #---------------------------------------------------- chr1 6845002 6845509 ME_111|6845256.035411,81.837717,172.113285,0.493287,211.042340,0.919712,0.016069,0.019776,6847517.000000,6842985.000000 chr1 8665745 8665829 ME_97|8665787.757674,17.711232,24.198635,0.944998,5.024479,0.996909,0.000628,0.000616,8667827.000000,8663520.000000 chr1 9287498 9287636 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ME_1840|171385226.214237,37.872673,62.097051,0.794534,9.859503,0.982884,0.003451,0.003416,171387237.000000,171382210.000000 chr4 173480127 173480460 ME_1930|173480294.012455,58.412396,107.817899,0.339393,26.206003,0.709892,0.259621,0.008220,173483277.000000,173478310.000000 chr4 176222651 176222759 ME_1883|176222705.203492,23.976215,30.174034,0.076087,249.873611,0.784152,0.212650,0.001089,176226207.000000,176220430.000000 chr4 176592132 176592511 ME_1857|176592321.721101,66.071232,123.550836,0.499995,250.000000,0.932293,0.014065,0.014051,176594622.000000,176590015.000000 chr4 176649039 176649160 ME_1819|176649100.299862,26.197474,34.402422,0.903231,45.426386,0.929453,0.001164,0.066041,176650557.000000,176645695.000000 chr4 177123653 177123821 ME_1839|177123737.287979,32.989354,51.040088,0.832942,12.382782,0.987617,0.002497,0.002472,177125772.000000,177121570.000000 chr4 177686571 177686955 ME_1904|177686763.384154,66.677404,124.979092,0.379242,10.125567,0.822259,0.125218,0.014393,177689622.000000,177684760.000000 chr4 181273178 181273320 ME_1862,ME_1858|181273249.604670,29.087830,41.914714,0.872367,13.900371,0.264676,0.000468,0.002228,181275297.000000,181269160.000000 chr4 181586331 181586780 ME_1866|181586555.951638,65.533569,159.090781,0.582412,250.000000,0.969483,0.006292,0.006885,181588902.000000,181583965.000000 chr4 183898880 183899004 ME_1822|183898942.415527,26.156306,35.699972,0.105207,24.755466,0.993357,0.001322,0.001356,183901857.000000,183896890.000000 chr4 185395657 185395735 ME_1917|185395696.383670,18.869087,20.000000,0.025738,30.668805,0.992657,0.000274,0.006262,185399172.000000,185393635.000000 chr4 185943340 185943448 ME_1837|185943394.643462,24.234707,29.860968,0.918990,36.534351,0.995172,0.000983,0.000961,185945457.000000,185940130.000000 chr4 188691190 188691476 ME_1865|188691333.599622,51.302781,92.028895,0.700323,21.337196,0.889001,0.007152,0.084046,188693382.000000,188688235.000000 chr4 188749392 188749771 ME_1831|188749581.892202,65.983713,123.307186,0.626345,25.590141,0.873254,0.014969,0.073603,188751147.000000,188746825.000000 chr4 190988697 190988949 ME_1932|190988823.542355,50.415876,75.445702,0.339575,3.532402,0.970768,0.005775,0.006171,190991592.000000,190986850.000000 chr5 14771928 14772071 ME_1943|14771999.768207,29.685869,41.944321,0.875701,15.166656,0.991790,0.001658,0.001638,14774029.000000,14769363.000000 chr5 14878534 14878606 ME_1996|14878570.455323,15.702278,20.000000,0.004309,15.373537,0.999782,0.000044,0.000044,14882060.000000,14876523.000000 chr5 18287161 18287240 ME_2027|18287201.299105,19.371462,20.000000,0.032126,19.882142,0.998285,0.000343,0.000344,18290525.000000,18285168.000000 chr5 21114459 21114544 ME_1986|21114501.900823,22.155675,20.000000,0.053094,17.005160,0.998966,0.000207,0.000210,21117905.000000,21112458.000000 chr5 25314865 25314933 ME_2018|25314899.723417,11.020000,22.988449,0.006069,249.312728,0.999689,0.000064,0.000063,25318175.000000,25312608.000000 chr5 27776822 27776999 ME_1981|27776910.932948,34.486549,54.120242,0.824733,201.047392,0.703146,0.001972,0.289204,27779134.000000,27773298.000000 chr5 30940979 30941218 ME_1967|30941098.867113,44.383391,75.333969,0.661681,250.000000,0.975908,0.005006,0.004844,30943400.000000,30938582.000000 chr5 31326770 31326884 ME_2011|31326827.635626,25.045968,32.286128,0.078172,13.369024,0.995093,0.001174,0.000970,31330265.000000,31325568.000000 chr5 31457228 31457372 ME_2010|31457300.270695,29.041968,42.744226,0.131659,42.709066,0.893353,0.100208,0.001658,31460720.000000,31455423.000000 chr5 31820662 31820851 ME_1984|31820757.125012,36.308546,58.356256,0.195457,41.231960,0.953550,0.034057,0.003243,31823990.000000,31819143.000000 chr5 32524411 32524754 ME_2014|32524582.751057,59.878789,111.399547,0.348698,10.422637,0.945780,0.010774,0.011123,32527295.000000,32522582.000000 chr5 34184423 34184660 ME_1945|34184542.386376,43.718110,74.780802,0.750865,249.552953,0.740350,0.010868,0.237813,34186820.000000,34181448.000000 chr5 34304799 34304867 ME_2023|34304833.727446,13.887049,20.000000,0.030407,9.338992,0.999510,0.000098,0.000099,34308275.000000,34302798.000000 chr5 34800005 34800088 ME_1938|34800046.988964,18.491164,22.581645,0.044376,237.608892,0.564298,0.434596,0.000282,34803905.000000,34798308.000000 chr5 37465971 37466091 ME_1974|37466031.601620,24.985688,35.252031,0.100151,249.776941,0.971762,0.023343,0.001249,37469120.000000,37463748.000000 chr5 52297515 52297690 ME_1944|52297603.001357,34.109713,53.684671,0.820012,22.780092,0.826926,0.002421,0.163695,52299665.000000,52294578.000000 chr5 54469564 54469970 ME_2000|54469767.813749,69.373799,133.714779,0.613638,250.000000,0.654808,0.012012,0.301082,54472025.000000,54466788.000000 chr5 55241429 55241637 ME_2022|55241533.346502,39.033378,64.707273,0.218502,19.517605,0.893267,0.092903,0.003469,55244060.000000,55239603.000000 chr5 55374532 55374624 ME_1954,ME_2038|55374578.293080,21.691453,24.113972,0.942641,21.475141,0.965719,0.001037,0.000625,55379494.000000,55372203.000000 chr5 56071662 56071761 ME_1975|56071712.176978,27.939388,21.752859,0.706318,4.383052,0.996030,0.000805,0.000796,56073650.000000,56068998.000000 chr5 56248101 56248632 ME_2033|56248367.166112,94.942131,170.631881,0.520833,250.000000,0.767443,0.022555,0.150292,56250544.000000,56246178.000000 chr5 56469659 56469739 ME_1964|56469699.654248,19.951087,20.000000,0.327636,212.097553,0.998691,0.000270,0.000265,56472140.000000,56467413.000000 chr5 59902163 59902558 ME_1947|59902361.353839,68.604633,128.871202,0.614795,20.167199,0.685144,0.013158,0.267782,59904110.000000,59899788.000000 chr5 60627819 60628013 ME_1961|60627916.682513,42.361989,54.402794,0.855947,104.859491,0.993841,0.001385,0.001216,60630080.000000,60624753.000000 chr5 61422310 61422436 ME_1955|61422373.202037,26.075344,37.030309,0.887837,249.807855,0.957693,0.001422,0.036737,61424660.000000,61419242.000000 chr5 67367194 67367408 ME_1948|67367301.338567,45.543314,61.523179,0.741416,6.972444,0.980863,0.003996,0.003785,67369310.000000,67364223.000000 chr5 67713651 67713724 ME_1992|67713687.968361,16.444027,20.000000,0.125558,103.942997,0.999299,0.000141,0.000142,67716800.000000,67711548.000000 chr5 72770224 72770342 ME_2005|72770283.609232,24.851368,34.285360,0.103464,11.202925,0.942772,0.052273,0.001270,72773735.000000,72768513.000000 chr5 74101502 74101664 ME_1962|74101583.182526,31.933543,49.123494,0.490964,204.121817,0.987793,0.002483,0.002485,74103905.000000,74099268.000000 chr5 74220744 74221164 ME_1971|74220954.568717,73.138422,137.271724,0.512035,185.075667,0.908467,0.018628,0.019149,74223110.000000,74218788.000000 chr5 74285922 74286049 ME_2013|74285985.629557,28.012335,35.500965,0.121766,17.229997,0.993845,0.001311,0.001240,74289320.000000,74283933.000000 chr5 75435587 75435907 ME_1977|75435747.233773,56.319339,103.529788,0.329271,14.417976,0.901814,0.062885,0.009461,75438755.000000,75433713.000000 chr5 78654284 78654681 ME_1965|78654483.311361,68.887413,129.435535,0.523868,221.980475,0.553865,0.009971,0.408503,78656750.000000,78652263.000000 chr5 78907605 78908032 ME_2003|78907819.392503,74.234831,139.301198,0.442975,250.000000,0.912938,0.017207,0.018842,78910025.000000,78905553.000000 chr5 81419296 81419685 ME_1963|81419491.192600,67.604914,126.826712,0.619218,27.908136,0.526604,0.009411,0.439154,81421475.000000,81415908.000000 chr5 84457275 84457356 ME_1993|84457316.016622,20.159153,20.000000,0.956651,14.941529,0.998900,0.000224,0.000220,84459365.000000,84453888.000000 chr5 87153379 87153613 ME_2015|87153496.740628,43.289398,73.816052,0.246475,20.775848,0.962347,0.018997,0.004690,87156230.000000,87151503.000000 chr5 88030393 88030477 ME_2039|88030435.676413,20.464299,21.363609,0.033719,28.341187,0.998061,0.000487,0.000370,88033925.000000,88028373.000000 chr5 92922621 92922787 ME_1949|92922704.434203,32.788076,50.610674,0.829824,23.751872,0.958534,0.003500,0.030567,92924750.000000,92919408.000000 chr5 92975538 92975879 ME_1952|92975709.057317,59.471447,111.028345,0.650989,5.860175,0.614844,0.008154,0.355927,92977160.000000,92972943.000000 chr5 102093778 102093858 ME_2012|102093818.489640,20.115848,20.000000,0.030481,24.827708,0.998465,0.000306,0.000313,102097295.000000,102091758.000000 chr5 102518889 102518986 ME_1979|102518937.704767,21.850783,26.735237,0.065121,20.913838,0.996464,0.000808,0.000695,102522365.000000,102516888.000000 chr5 103155465 103156047 ME_1972|103155756.601721,103.972853,186.676283,0.469562,250.000000,0.899486,0.021752,0.021818,103158140.000000,103153458.000000 chr5 104481080 104481218 ME_1969|104481149.095956,28.271717,40.801961,0.876466,11.059885,0.870812,0.001476,0.123432,104483210.000000,104478093.000000 chr5 107717307 107717547 ME_2008|107717427.568172,44.206986,75.724700,0.253296,33.010402,0.941940,0.009521,0.034891,107720450.000000,107715362.000000 chr5 111377205 111377402 ME_1946|111377303.811743,42.274423,56.288933,0.723677,5.926939,0.982770,0.003591,0.003413,111379295.000000,111374328.000000 chr5 112171632 112171893 ME_2035|112171762.811950,45.873502,84.670865,0.255000,14.907781,0.970104,0.009328,0.005500,112174910.000000,112169718.000000 chr5 113827111 113827286 ME_2026|113827198.718922,40.091503,47.452458,0.663292,2.877857,0.985753,0.002936,0.002842,113829125.000000,113824562.000000 chr5 114880273 114880528 ME_1990|114880401.003592,46.300958,80.741290,0.265511,16.626109,0.953369,0.022717,0.007812,114883564.000000,114878537.000000 chr5 118808942 118809092 ME_1983|118809017.248043,30.327682,44.569133,0.143973,26.883490,0.988652,0.003268,0.002096,118812364.000000,118807458.000000 chr5 122016167 122016264 ME_1936|122016215.973237,21.776491,26.553624,0.936106,13.126544,0.821183,0.000624,0.176390,122017639.000000,122012718.000000 chr5 124082851 124083200 ME_1956|124083025.801564,64.676281,110.028911,0.542501,114.760713,0.953324,0.009701,0.009588,124085195.000000,124080798.000000 chr5 124702047 124702183 ME_1953|124702115.575931,27.911132,40.033677,0.504837,229.392244,0.992020,0.001621,0.001621,124704455.000000,124699773.000000 chr5 125997010 125997091 ME_2004|125997051.404869,20.551309,20.000000,0.025457,249.977301,0.998636,0.000286,0.000274,126000305.000000,125994768.000000 chr5 128341281 128341417 ME_1958|128341349.509953,28.487592,39.790438,0.119152,26.035655,0.536714,0.459906,0.000865,128345120.000000,128339312.000000 chr5 130852006 130852064 ME_2032|130852035.526873,7.536342,21.188529,0.000689,249.396626,0.999965,0.000007,0.000007,130855325.000000,130849743.000000 chr5 132442032 132442096 ME_2025|132442064.618406,12.083426,20.000000,0.001111,249.997535,0.999944,0.000011,0.000011,132445355.000000,132439787.000000 chr5 133403043 133403141 ME_1950|133403092.546769,23.092858,25.528606,0.948054,22.118192,0.979959,0.000584,0.017754,133405145.000000,133399593.000000 chr5 133725052 133726178 ME_2034|133725615.259403,103.084677,459.664499,0.565966,250.000000,0.940430,0.030457,0.009641,133728035.000000,133722737.000000 chr5 133961609 133961833 ME_1968|133961721.554574,41.810531,70.166709,0.766687,249.618828,0.690094,0.003168,0.297722,133964000.000000,133958387.000000 chr5 138648695 138648805 ME_1988|138648750.311588,25.124540,30.009476,0.072097,21.005635,0.991362,0.000915,0.005220,138652235.000000,138646728.000000 chr5 138655508 138655691 ME_2001|138655599.744383,35.527680,56.052295,0.184610,20.534843,0.985079,0.003371,0.002926,138658835.000000,138653553.000000 chr5 138837931 138838054 ME_2030|138837993.107321,26.225710,35.330917,0.116429,75.496553,0.993443,0.001306,0.001342,138841310.000000,138835878.000000 chr5 138991492 138991686 ME_2002|138991589.160734,37.017229,60.078843,0.201759,13.316759,0.863993,0.124208,0.003061,138994910.000000,138989568.000000 chr5 139493525 139493678 ME_1995|139493601.978671,34.214450,42.353786,0.201338,12.996836,0.713701,0.281954,0.001162,139496720.000000,139491573.000000 chr5 139876020 139876319 ME_1989|139876169.980252,54.110329,95.687232,0.358092,71.225762,0.827214,0.151343,0.005656,139878785.000000,139874058.000000 chr5 139902818 139903455 ME_2036|139903136.853495,118.018263,200.356088,0.485333,250.000000,0.884941,0.025717,0.025055,139905365.000000,139900863.000000 chr5 139943942 139944263 ME_1957|139944102.835997,56.123899,104.528594,0.447395,250.000000,0.956879,0.008779,0.009065,139946465.000000,139941798.000000 chr5 141534887 141534965 ME_2020|141534926.529010,18.778487,20.000000,0.015461,17.162287,0.997558,0.001798,0.000167,141538430.000000,141533868.000000 chr5 142546965 142547094 ME_2028|142547030.102704,27.162824,37.439959,0.885001,27.645385,0.992583,0.001496,0.001480,142549085.000000,142543908.000000 chr5 143603888 143604094 ME_1987|143603991.364315,39.097219,63.817020,0.226631,7.046042,0.977569,0.007166,0.003969,143607200.000000,143601963.000000 chr5 144453658 144453947 ME_1973|144453803.121194,51.618409,92.667338,0.339516,34.773398,0.963378,0.007288,0.007711,144456590.000000,144451758.000000 chr5 145055705 145055820 ME_1994,ME_2019|145055762.982977,25.250220,32.188537,0.907948,23.550912,0.987604,0.001115,0.001113,145057610.000000,145052583.000000 chr5 145494404 145495052 ME_2006|145494728.590804,251.476793,72.703968,0.760157,232.104805,0.985739,0.003194,0.002882,145497035.000000,145491873.000000 chr5 145657074 145657136 ME_1998|145657105.679274,10.931823,20.000000,0.008102,6.195487,0.999583,0.000086,0.000084,145660625.000000,145655058.000000 chr5 145670393 145670576 ME_1934|145670485.235809,35.441217,56.115045,0.186003,19.077419,0.985375,0.002910,0.002985,145672895.000000,145668438.000000 chr5 146021035 146021173 ME_1997|146021104.670858,29.092095,40.164745,0.121440,18.078294,0.905819,0.088302,0.001527,146024495.000000,146019678.000000 chr5 148931185 148931262 ME_1978|148931224.194064,18.464873,20.000000,0.026623,249.948051,0.982862,0.015837,0.000472,148934405.000000,148928943.000000 chr5 149109812 149109914 ME_1951|149109863.491514,22.214538,28.478129,0.932580,28.027869,0.936494,0.000779,0.060539,149111930.000000,149106603.000000 chr5 149787542 149787819 ME_2024|149787680.893280,49.591901,89.191408,0.295250,22.086899,0.845400,0.129915,0.006530,149790935.000000,149785638.000000 chr5 154090005 154090069 ME_1941|154090037.541785,10.575149,21.829025,0.985994,249.920092,0.975209,0.000143,0.024226,154092320.000000,154086858.000000 chr5 155318680 155319185 ME_2007|155318933.372208,85.560654,166.891851,0.438075,250.000000,0.927821,0.015369,0.015504,155321435.000000,155316618.000000 chr5 157718908 157719159 ME_1960|157719034.316868,50.384538,75.034081,0.663194,2.594120,0.970779,0.006170,0.005763,157721000.000000,157716243.000000 chr5 162744769 162744883 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