#---------------------------------------------------- #Date Time : 05/11/2016 13:10:48 #-N : SRR1517789 #-i : #-j : #-ij : /Users/azofeifa/bidirectional_hits_all/bedgraph_files_mouse/SRR1517789.fastqbowtie2.sorted.BedGraph #-k : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/SRR1517789-1_prelim_bidir_hits.bed #-o : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/ #-ns : 100 #-br : 15 #-bct : 1.0 #-elon : 0 #-pad : 2000 #-minK : 1 #-maxK : 1 #-ms_pen : 1 #-mi : 2000 #-ct : 0.0001 #-rounds : 32 #-ALPHA_0 : 10 #-BETA_0 : 10 #-BETA_1 : 100 #-ALPHA_2 : 1 #-ALPHA_3 : 100 #---------------------------------------------------- chr1 1482086 1482295 ME_49|1482190.617690,39.501403,65.008304,0.783352,13.729652,0.965715,0.004048,0.019203,1483391.000000,1478949.000000 chr1 1588890 1589333 ME_137|1589112.003200,76.745417,144.701962,0.546859,170.566530,0.886272,0.021745,0.033660,1591271.000000,1586874.000000 chr1 2159159 2159413 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ME_1089|45565745.692462,16.094613,20.000000,0.013525,247.030136,0.999456,0.000117,0.000109,45569005.000000,45563468.000000 chr14 45578806 45579323 ME_1065|45579065.238628,91.506240,167.124123,0.603038,117.358173,0.343387,0.629825,0.007320,45580945.000000,45576728.000000 chr14 50003226 50003304 ME_1025|50003265.121998,19.076413,20.000000,0.976307,13.114650,0.999412,0.000119,0.000117,50005300.000000,49999808.000000 chr14 50048628 50048785 ME_1042|50048706.599835,34.395690,44.154592,0.785901,9.088379,0.988992,0.002273,0.002189,50050720.000000,50045573.000000 chr14 50102718 50102886 ME_1030,ME_1004|50102802.227397,33.443665,50.674422,0.165052,22.521460,0.271751,0.000677,0.000701,50106880.000000,50100983.000000 chr14 50104998 50105107 ME_1030,ME_1004|50105052.859570,24.231293,30.413893,0.921828,27.956504,0.721492,0.000690,0.000682,50106880.000000,50100983.000000 chr14 50320669 50320751 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ME_1070|51601709.274071,80.652591,150.632024,0.529454,226.723484,0.876515,0.026668,0.025128,51603880.000000,51599513.000000 chr14 52348338 52348622 ME_1088|52348480.717260,50.827352,91.092778,0.297836,22.675164,0.964659,0.007054,0.007126,52351030.000000,52346513.000000 chr14 52512744 52512824 ME_1054|52512784.544768,20.019766,20.000000,0.977412,249.970461,0.998742,0.000242,0.000308,52515070.000000,52509518.000000 chr14 53621510 53621677 ME_1013|53621593.987828,32.822152,50.740797,0.835409,249.635185,0.979844,0.002542,0.010419,53623090.000000,53618498.000000 chr14 54458764 54458847 ME_1022|54458806.203721,21.231205,20.000000,0.992978,249.992844,0.999640,0.000073,0.000073,54461080.000000,54455528.000000 chr14 54661804 54661932 ME_1050|54661868.612966,27.415505,36.391628,0.892990,21.212662,0.993234,0.001364,0.001350,54663910.000000,54659078.000000 chr14 54839373 54839552 ME_1106|54839462.938210,34.921737,54.949922,0.179717,11.736820,0.676585,0.315712,0.002024,54842740.000000,54838043.000000 chr14 55329293 55329981 ME_1085|55329637.583303,132.051837,211.723375,0.503860,250.000000,0.917935,0.018141,0.018137,55332070.000000,55327193.000000 chr14 55542218 55542378 ME_1083|55542298.918214,31.573569,48.445374,0.158823,249.585962,0.962747,0.028230,0.002316,55545370.000000,55540013.000000 chr14 56792672 56792819 ME_1028|56792745.848638,30.088193,43.364071,0.867478,16.074425,0.991068,0.001797,0.001784,56794765.000000,56789603.000000 chr14 57031153 57031343 ME_1011|57031248.413517,35.840131,59.295904,0.797379,249.667379,0.732554,0.002644,0.257340,57032845.000000,57028283.000000 chr14 58269600 58269729 ME_1057|58269664.736220,26.341987,38.087676,0.881739,8.431545,0.992321,0.001540,0.001535,58271665.000000,58266668.000000 chr14 59594833 59594965 ME_1084|59594899.554449,26.925997,38.949106,0.112838,36.172129,0.986890,0.007677,0.001392,59598265.000000,59592863.000000 chr14 59836355 59836508 ME_1032|59836432.227935,30.932662,45.679209,0.863470,27.762403,0.990634,0.001937,0.001857,59838475.000000,59833253.000000 chr14 61748573 61748713 ME_1015|61748643.142320,29.225726,40.775988,0.125229,26.528488,0.989839,0.001651,0.003557,61751575.000000,61746593.000000 chr14 62209452 62209666 ME_1018|62209559.451633,39.988533,66.876025,0.773037,25.844635,0.922085,0.004167,0.062299,62210875.000000,62206358.000000 chr14 63268166 63268367 ME_1076|63268266.610276,38.285842,62.251891,0.208920,9.715035,0.982478,0.003497,0.003535,63271300.000000,63266258.000000 chr14 63375655 63375965 ME_1051|63375810.565138,46.456758,108.807398,0.219583,16.267914,0.746259,0.240897,0.004112,63378880.000000,63374648.000000 chr14 63806729 63807001 ME_1104|63806865.287576,49.255674,86.757137,0.283579,125.051811,0.667399,0.314963,0.004606,63810190.000000,63804713.000000 chr14 64173491 64173873 ME_1096,ME_1108,ME_1074|64173682.660333,66.612030,124.245649,0.625777,18.754340,0.092922,0.001371,0.010204,64177870.000000,64169648.000000 chr14 64971264 64971514 ME_1046|64971389.239999,46.034262,78.946131,0.661374,20.352235,0.971713,0.005701,0.006531,64973410.000000,64968668.000000 chr14 65389155 65389354 ME_1043|65389255.130653,37.887464,61.888706,0.800268,11.613076,0.983567,0.003391,0.003260,65391265.000000,65386373.000000 chr14 65784223 65784408 ME_1087|65784315.804207,35.824477,56.748336,0.190972,19.132113,0.983441,0.004293,0.003178,65787115.000000,65782328.000000 chr14 65868548 65868643 ME_1029|65868596.086652,21.416260,26.143866,0.936643,12.973880,0.996375,0.000736,0.000722,65870635.000000,65865158.000000 chr14 69330251 69330555 ME_1111|69330403.746575,54.061113,98.161685,0.316698,26.463229,0.958853,0.008212,0.008298,69332815.000000,69328508.000000 chr14 70611010 70611094 ME_1079|70611052.029191,22.021292,20.000000,0.093112,12.500455,0.999562,0.000088,0.000088,70614340.000000,70609028.000000 chr14 73360832 73360928 ME_1075|73360880.497152,22.229414,25.868450,0.126412,99.530269,0.997130,0.000576,0.000586,73364035.000000,73358738.000000 chr14 73429591 73429711 ME_1033|73429651.608236,25.511167,34.365410,0.903049,39.265950,0.994009,0.001215,0.001194,73431715.000000,73426868.000000 chr14 73569556 73569728 ME_1061,ME_1086|73569642.306246,34.617372,51.409154,0.910636,249.514484,0.832674,0.002004,0.000905,73574695.000000,73567118.000000 chr14 73617648 73617828 ME_1048|73617738.708873,35.209460,54.957263,0.817077,28.041170,0.985800,0.002858,0.002835,73619770.000000,73614728.000000 chr14 73713073 73713195 ME_1092|73713134.201219,28.617626,32.518556,0.146263,13.294312,0.993806,0.001235,0.001268,73716400.000000,73711103.000000 chr14 73853503 73853770 ME_1110|73853637.095098,48.403608,84.694579,0.276564,19.538931,0.724338,0.256060,0.006237,73856920.000000,73851698.000000 chr14 73925298 73925531 ME_1069|73925414.993652,43.155529,73.570449,0.397584,121.483510,0.976458,0.004748,0.004879,73927750.000000,73923233.000000 chr14 74194874 74194983 ME_1041|74194928.961500,24.357103,30.578828,0.926537,13.187409,0.995676,0.000870,0.000884,74196970.000000,74192483.000000 chr14 74528159 74528680 ME_1094|74528419.694824,84.895859,175.533228,0.565279,250.000000,0.691663,0.021669,0.231220,74530570.000000,74526233.000000 chr14 74551504 74551745 ME_1008|74551624.834402,44.164086,76.591068,0.743351,13.731874,0.898452,0.005132,0.082277,74553190.000000,74548448.000000 chr14 75650589 75650860 ME_1107,ME_1021|75650724.938465,49.114087,86.459838,0.286882,12.331696,0.595184,0.004173,0.004320,75654790.000000,75648833.000000 chr14 75652715 75653050 ME_1107,ME_1021|75652882.812201,58.691845,108.615177,0.655705,8.949074,0.363890,0.004431,0.004128,75654790.000000,75648833.000000 chr14 75819543 75819816 ME_1060|75819680.169128,49.143140,87.167113,0.619875,31.737952,0.965692,0.006865,0.008205,75821710.000000,75817223.000000 chr14 77265610 77265795 ME_1102|77265702.704240,35.376114,57.184015,0.188977,54.604587,0.908224,0.080796,0.002833,77268730.000000,77263613.000000 chr14 77504719 77504976 ME_1109|77504847.625445,46.532425,81.850281,0.270559,23.550250,0.705796,0.276324,0.005469,77507635.000000,77502878.000000 chr14 78546812 78546901 ME_1101|78546856.989031,21.709575,23.122864,0.045477,24.807245,0.996903,0.001068,0.000533,78550330.000000,78545258.000000 chr14 79956254 79956436 ME_1024|79956345.233002,35.730692,55.355192,0.821267,18.148238,0.940399,0.002874,0.048901,79957390.000000,79953053.000000 chr14 81685736 81685831 ME_1059,ME_1014|81685784.179286,21.248848,25.937077,0.927603,67.974758,0.768869,0.000566,0.000523,81690010.000000,81682433.000000 chr14 81687164 81687329 ME_1059,ME_1014|81687247.144782,32.452097,50.206375,0.158870,26.092407,0.225755,0.000519,0.000654,81690010.000000,81682433.000000 chr14 83612742 83613072 ME_1091|83612907.523006,58.056173,107.223480,0.338097,9.504362,0.950730,0.009824,0.009973,83615365.000000,83610998.000000 chr14 84564259 84564337 ME_1020,ME_1062|84564298.073105,18.493007,20.434115,0.972530,10.856229,0.996783,0.000290,0.000290,84566260.000000,84561068.000000 chr14 85065145 85065462 ME_1095|85065304.419121,56.169974,102.303577,0.325031,19.785826,0.756824,0.214634,0.007647,85068475.000000,85063268.000000 chr14 85441605 85441791 ME_1026|85441698.669157,36.043947,56.740230,0.775244,179.613518,0.985137,0.003065,0.002964,85443910.000000,85438718.000000 chr14 89753924 89754158 ME_1071|89754041.673790,43.220253,73.647503,0.752878,26.927821,0.795067,0.004111,0.189224,89756095.000000,89750588.000000 chr14 89881646 89882503 ME_1063|89882074.655590,264.923149,163.541862,0.669344,250.000000,0.968089,0.013565,0.004853,89884510.000000,89879513.000000 chr14 89912338 89912472 ME_1056|89912405.518279,28.077513,39.291382,0.882026,13.174292,0.992352,0.001549,0.001525,89914450.000000,89909078.000000 chr14 90833192 90833282 ME_1010|90833237.921325,21.264347,23.711594,0.050344,249.752808,0.997106,0.000680,0.000558,90835960.000000,90830963.000000 chr14 91935361 91935492 ME_1007|91935426.709704,27.613190,37.939192,0.888945,15.636117,0.988549,0.001484,0.005739,91936780.000000,91932023.000000 chr14 91953491 91953632 ME_1055|91953562.152889,28.613088,41.550332,0.874931,20.779650,0.949200,0.001637,0.044422,91955620.000000,91950113.000000 chr14 93209246 93209429 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chr19 41261089 41261374 ME_1646|41261231.939077,51.132236,91.620210,0.297660,11.880954,0.367471,0.041053,0.583426,41264448.000000,41259211.000000 chr19 41306462 41306574 ME_1601|41306518.676382,24.867361,31.373457,0.085184,16.976573,0.995030,0.001011,0.000999,41309268.000000,41304496.000000 chr19 41630126 41630259 ME_1597|41630192.913953,27.842772,38.842934,0.115272,14.441648,0.992519,0.001485,0.001542,41632863.000000,41628151.000000 chr19 41766187 41766289 ME_1674|41766238.179075,23.366917,27.531719,0.062065,16.417345,0.990158,0.007016,0.000723,41769708.000000,41764381.000000 chr19 41925641 41925769 ME_1682|41925705.188433,26.348611,37.665091,0.113304,19.273452,0.992076,0.002093,0.001477,41929053.000000,41923666.000000 chr19 42363634 42364378 ME_1681|42364006.653823,78.364952,293.395409,0.636705,250.000000,0.964635,0.008617,0.007050,42366363.000000,42361531.000000 chr19 43908207 43908285 ME_1662|43908246.047564,18.983260,20.000000,0.035922,18.831261,0.998859,0.000228,0.000232,43911693.000000,43906201.000000 chr19 44450694 44450832 ME_1687|44450763.781831,29.133127,40.025448,0.141775,11.302442,0.990403,0.001682,0.002873,44454108.000000,44448721.000000 chr19 44560959 44561030 ME_1673|44560995.175154,15.426305,20.000000,0.000304,249.999675,0.999985,0.000003,0.000003,44564283.000000,44558716.000000 chr19 44886341 44886706 ME_1672|44886523.887622,63.690043,118.821980,0.364275,18.562190,0.615454,0.350481,0.009616,44889258.000000,44885056.000000 chr19 45219977 45220079 ME_1649|45220028.896946,23.334359,27.582404,0.062043,249.910947,0.679608,0.316456,0.002492,45223188.000000,45217741.000000 chr19 45259976 45260229 ME_1655|45260103.088578,45.959501,80.433673,0.289565,180.547864,0.973661,0.005228,0.005542,45262938.000000,45257881.000000 chr19 46210911 46211316 ME_1648,ME_1620|46211114.258992,71.790872,130.486443,0.465750,190.266483,0.231993,0.007495,0.004086,46214973.000000,46208941.000000 chr19 46272630 46273009 ME_1630|46272819.973061,66.075253,123.603944,0.624218,141.801191,0.863980,0.014188,0.084688,46274733.000000,46270501.000000 chr19 46866287 46866365 ME_1592|46866326.560952,19.115817,20.000000,0.981297,249.978077,0.997871,0.000198,0.001349,46868493.000000,46863046.000000 chr19 47314954 47315053 ME_1636|47315004.376617,22.677952,26.778290,0.938834,244.650055,0.906638,0.000645,0.090829,47317293.000000,47312041.000000 chr19 47486208 47486342 ME_1642|47486275.678593,27.826852,39.205294,0.883389,18.124511,0.992458,0.001514,0.001507,47488293.000000,47483236.000000 chr19 47615507 47615684 ME_1664|47615596.054297,34.916059,53.367060,0.226883,100.896259,0.903268,0.052804,0.036787,47618688.000000,47613451.000000 chr19 47887596 47887673 ME_1695,ME_1594|47887634.832801,18.433020,20.000000,0.011019,45.657107,0.926699,0.000106,0.000107,47891718.000000,47885776.000000 chr19 47889789 47889915 ME_1695,ME_1594|47889852.501039,25.600267,37.206071,0.887764,6.643875,0.072247,0.000108,0.000106,47891718.000000,47885776.000000 chr19 48112315 48112416 ME_1659|48112365.981544,22.540125,27.771585,0.945146,37.183668,0.996920,0.000624,0.000614,48114438.000000,48108991.000000 chr19 48156242 48156392 ME_1657|48156317.356602,30.555429,44.463473,0.142336,24.022122,0.968572,0.023640,0.002018,48159678.000000,48154696.000000 chr19 48383281 48383586 ME_1647|48383434.063348,53.728133,98.436596,0.682234,15.275492,0.858551,0.008094,0.111093,48385473.000000,48380311.000000 chr19 51460099 51460185 ME_1615|51460142.607674,21.828622,20.969236,0.962583,249.942212,0.835034,0.000345,0.163608,51462423.000000,51457096.000000 chr19 52825463 52825747 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chr2 17310580 17310762 ME_1777|17310671.385815,38.140494,52.636522,0.749290,8.043058,0.984943,0.003124,0.002989,17312677.000000,17307620.000000 chr2 20514948 20515350 ME_1821|20515149.441125,68.708384,132.127096,0.394799,250.000000,0.956908,0.008945,0.009056,20517667.000000,20512835.000000 chr2 22634072 22634236 ME_1926|22634154.612807,32.713044,49.087307,0.161125,19.904577,0.975750,0.014896,0.002411,22637527.000000,22632110.000000 chr2 22699064 22699129 ME_1724|22699097.309194,6.526243,25.927753,0.997580,11.221490,0.999877,0.000026,0.000025,22700272.000000,22695590.000000 chr2 24103759 24103994 ME_1946|24103876.905480,43.344300,74.403674,0.248352,249.294579,0.920927,0.060655,0.004852,24106897.000000,24102050.000000 chr2 24339821 24340046 ME_1742|24339933.872183,42.076305,70.273008,0.231107,17.769757,0.978956,0.004189,0.004288,24342877.000000,24337895.000000 chr2 24687529 24687731 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chr2 29136463 29136550 ME_1850|29136507.224813,19.671025,23.722048,0.950004,27.141621,0.997049,0.000567,0.000723,29138571.000000,29133065.000000 chr2 29324061 29324201 ME_1787|29324131.692702,33.105638,37.139444,0.815922,7.501887,0.991516,0.001745,0.001685,29326146.000000,29320940.000000 chr2 30053462 30053613 ME_1751|30053537.754081,30.476094,45.241184,0.859385,21.331814,0.989892,0.002377,0.001933,30055582.000000,30050225.000000 chr2 30910744 30911159 ME_1884|30910951.617443,71.984596,135.525590,0.398740,17.664306,0.911144,0.017593,0.018484,30913357.000000,30909019.000000 chr2 31956593 31956747 ME_1770|31956670.249536,32.479291,44.382929,0.838699,12.725122,0.989863,0.002090,0.002012,31958707.000000,31953365.000000 chr2 32062715 32062913 ME_1899|32062814.713325,37.785057,61.412826,0.202999,173.354161,0.751613,0.238023,0.002684,32066332.000000,32060615.000000 chr2 32138716 32139037 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chr2 42247452 42247632 ME_1708|42247542.441378,35.082203,54.557309,0.819566,14.780632,0.965386,0.002832,0.023749,42249217.000000,42244220.000000 chr2 43002099 43002180 ME_1797|43002140.008797,20.791439,20.000000,0.966541,249.970728,0.981797,0.000360,0.016788,43004422.000000,42998870.000000 chr2 43454256 43454564 ME_1921|43454410.333271,55.178682,98.784059,0.678046,14.311258,0.677778,0.006468,0.298013,43456432.000000,43451150.000000 chr2 43762374 43762756 ME_1798|43762565.346453,66.463548,124.722687,0.589945,189.538660,0.928629,0.015391,0.014202,43764772.000000,43760195.000000 chr2 43932375 43932456 ME_1952|43932415.769353,20.574510,20.025104,0.040018,22.136432,0.891764,0.106496,0.000576,43936072.000000,43930370.000000 chr2 44167178 44167539 ME_1898|44167358.818743,59.003663,121.804672,0.314119,36.343949,0.907172,0.060801,0.009225,44170372.000000,44165285.000000 chr2 44437337 44437424 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ME_1740,ME_1698|65744413.090521,12.463499,20.000000,0.996193,249.990251,0.976458,0.000038,0.000038,65746417.000000,65740535.000000 chr2 66662128 66662332 ME_1861|66662230.916399,38.310152,63.739932,0.796841,20.948783,0.983562,0.003447,0.003548,66664237.000000,66659390.000000 chr2 67677722 67677893 ME_1755,ME_1713|67677808.081969,33.319499,52.389909,0.824408,15.766737,0.516715,0.001423,0.001395,67681987.000000,67675490.000000 chr2 67679565 67679743 ME_1755,ME_1713|67679654.526042,34.016860,54.570109,0.186745,11.337469,0.469282,0.001395,0.001424,67681987.000000,67675490.000000 chr2 68538796 68538970 ME_1759|68538883.248472,35.034904,51.841143,0.808946,11.846212,0.986562,0.002782,0.002666,68540917.000000,68535620.000000 chr2 68903073 68903226 ME_1885|68903149.783406,31.982013,44.696546,0.156385,14.392969,0.989946,0.001997,0.002073,68906467.000000,68901110.000000 chr2 69462296 69462659 ME_1838|69462478.324331,63.305394,118.286559,0.472272,250.000000,0.945345,0.011232,0.011419,69464827.000000,69460160.000000 chr2 70086111 70086356 ME_1719|70086234.034058,43.881654,79.051151,0.743805,31.235196,0.800108,0.161564,0.025782,70087852.000000,70083110.000000 chr2 70435869 70436152 ME_1763|70436011.013219,58.959903,82.769374,0.682172,2.291888,0.967449,0.006904,0.006412,70437997.000000,70433075.000000 chr2 70559357 70559725 ME_1741|70559541.484601,63.937218,119.859956,0.367948,23.107944,0.935263,0.012851,0.013333,70561897.000000,70557545.000000 chr2 70812974 70813066 ME_1701|70813020.719094,20.786879,25.016940,0.051494,15.199076,0.997126,0.000572,0.000586,70815487.000000,70810970.000000 chr2 71191154 71191464 ME_1864|71191309.523485,54.951276,100.387284,0.321854,12.398120,0.894051,0.073181,0.008756,71194387.000000,71189270.000000 chr2 74959582 74959703 ME_1750|74959642.911424,26.216923,34.682635,0.901429,27.692395,0.992530,0.001256,0.002563,74961697.000000,74956265.000000 chr2 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