#---------------------------------------------------- #Date Time : 05/11/2016 13:10:41 #-N : SRR1517790 #-i : #-j : #-ij : /Users/azofeifa/bidirectional_hits_all/bedgraph_files_mouse/SRR1517790.fastqbowtie2.sorted.BedGraph #-k : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/SRR1517790-1_prelim_bidir_hits.bed #-o : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/ #-ns : 100 #-br : 15 #-bct : 1.0 #-elon : 0 #-pad : 2000 #-minK : 1 #-maxK : 1 #-ms_pen : 1 #-mi : 2000 #-ct : 0.0001 #-rounds : 32 #-ALPHA_0 : 10 #-BETA_0 : 10 #-BETA_1 : 100 #-ALPHA_2 : 1 #-ALPHA_3 : 100 #---------------------------------------------------- chr1 4680021 4680325 ME_51|4680173.494614,52.678743,98.832822,0.690334,18.585910,0.884262,0.007262,0.088417,4682223.000000,4677316.000000 chr1 6844988 6845516 ME_120|6845252.546116,88.210184,176.077999,0.458969,203.276685,0.876027,0.023958,0.031363,6847428.000000,6843121.000000 chr1 10798869 10799260 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chr19 51108365 51108624 ME_1412|51108495.223109,46.924632,82.522629,0.274259,13.685437,0.921939,0.055158,0.006203,51111626.000000,51107124.000000 chr19 51460048 51460200 ME_1347|51460124.380247,31.092759,45.188193,0.858475,249.715298,0.973891,0.001986,0.018366,51462401.000000,51457029.000000 chr19 51786787 51787148 ME_1430|51786967.957970,64.921086,115.944645,0.379813,4.780686,0.935833,0.012537,0.014019,51789701.000000,51784989.000000 chr19 51861774 51862214 ME_1373|51861994.412882,75.379255,144.657963,0.591978,8.886388,0.693435,0.035082,0.226351,51863951.000000,51859359.000000 chr19 52889785 52890181 ME_1359|52889983.592677,68.815952,129.019469,0.615096,17.444730,0.923815,0.015413,0.015193,52891616.000000,52887414.000000 chr19 54924430 54924512 ME_1426|54924471.754211,20.904809,20.000000,0.026814,34.432109,0.998571,0.000291,0.000290,54927956.000000,54922404.000000 chr19 55484722 55484799 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22699048 22699129 ME_1457|22699088.676553,20.395026,20.000000,0.981250,28.715605,0.999011,0.000203,0.000202,22700283.000000,22695601.000000 chr2 22784337 22784678 ME_1507|22784507.911832,60.009625,110.739901,0.345159,16.604703,0.946868,0.010437,0.011384,22787343.000000,22782481.000000 chr2 24148732 24149159 ME_1538|24148946.263847,74.292074,139.277410,0.594734,10.246151,0.903539,0.020774,0.018922,24150903.000000,24146416.000000 chr2 24184340 24184614 ME_1585|24184477.671810,49.281551,87.503084,0.285957,16.155386,0.966020,0.007834,0.006916,24187593.000000,24182431.000000 chr2 24940679 24941004 ME_1659|24940841.762610,57.370412,105.145111,0.331540,24.041874,0.916165,0.047540,0.009553,24943848.000000,24938806.000000 chr2 25451001 25451069 ME_1486|25451035.534286,14.282489,20.000000,0.992479,22.570448,0.999616,0.000078,0.000077,25453083.000000,25447531.000000 chr2 25991633 25991910 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chr2 33772404 33772502 ME_1672|33772453.711176,22.230438,26.981916,0.056237,11.729907,0.996827,0.000631,0.000648,33775923.000000,33770416.000000 chr2 37871300 37871531 ME_1584|37871415.920755,42.405191,72.887429,0.257784,250.000000,0.980178,0.003967,0.004119,37874253.000000,37869121.000000 chr2 37896299 37896386 ME_1485|37896342.962648,21.674205,22.284803,0.959641,25.234216,0.997800,0.000448,0.000438,37898388.000000,37893496.000000 chr2 38484527 38484976 ME_1665|38484752.026846,78.112377,146.364313,0.421339,103.401879,0.887344,0.021893,0.025342,38487123.000000,38482696.000000 chr2 38545935 38546405 ME_1748|38546170.753371,73.065938,162.156928,0.370137,44.837142,0.924081,0.018621,0.018348,38548908.000000,38544106.000000 chr2 38772698 38772841 ME_1719|38772770.018299,29.409012,42.556504,0.133781,15.105146,0.860390,0.133256,0.001648,38776173.000000,38771266.000000 chr2 38902671 38902766 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ME_1927|44394606.610320,65.913393,121.449933,0.637040,18.066959,0.937620,0.013551,0.012207,44396625.000000,44391778.000000 chr21 44488701 44488861 ME_1921|44488781.272150,31.861218,48.232671,0.839904,27.336726,0.987906,0.002431,0.002699,44490540.000000,44485453.000000 chr21 47800913 47801158 ME_1928|47801035.997723,45.024320,77.001324,0.747250,17.453663,0.947088,0.005145,0.033321,47803080.000000,47797918.000000 chr22 16272271 16272723 ME_1965|16272497.430990,78.715937,147.275727,0.581023,14.856267,0.856661,0.025470,0.053096,16274448.000000,16270021.000000 chr22 16982889 16983159 ME_1952|16983024.242623,48.736471,86.324726,0.282689,12.372690,0.968636,0.006260,0.006326,16985703.000000,16981051.000000 chr22 18029328 18029793 ME_2006,ME_1979|18029561.071741,80.910188,151.414184,0.426888,11.496094,0.120885,0.003642,0.004018,18035748.000000,18027691.000000 chr22 18032415 18032636 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ME_1978|47880420.186798,73.965590,138.918268,0.403752,17.747691,0.895240,0.028331,0.021285,47883048.000000,47878426.000000 chr22 48795125 48795310 ME_1968|48795218.192683,35.662956,57.029689,0.193547,19.920667,0.982247,0.005230,0.003247,48798513.000000,48793276.000000 chr22 48936564 48936726 ME_1960|48936645.602998,31.811344,49.040333,0.832946,29.087712,0.987555,0.002560,0.002471,48938703.000000,48934306.000000 chr3 3327437 3327638 ME_2142|3327537.963731,38.322159,62.359472,0.789725,226.889118,0.961840,0.003641,0.024092,3329797.000000,3324500.000000 chr3 4534899 4535137 ME_2115|4535018.524550,44.007433,74.588754,0.797889,32.658804,0.983436,0.003311,0.003393,4537012.000000,4532315.000000 chr3 4642833 4642956 ME_2288|4642894.966074,26.197255,34.854178,0.098571,15.724628,0.993635,0.001452,0.001257,4646317.000000,4640855.000000 chr3 5020600 5021196 ME_2130|5020898.844898,112.298140,185.677564,0.504186,136.501103,0.073863,0.911350,0.003879,5023162.000000,5018615.000000 chr3 5149888 5150021 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chr3 10299448 10299771 ME_2249|10299610.101392,56.894602,104.469796,0.331373,15.684982,0.953416,0.009277,0.009476,10302292.000000,10297625.000000 chr3 11190476 11190613 ME_2281|11190544.925162,28.441526,39.810440,0.118125,22.652685,0.992301,0.001532,0.001570,11193907.000000,11188490.000000 chr3 12760162 12760641 ME_2179|12760402.069847,79.887942,159.872741,0.580938,10.095410,0.835690,0.079958,0.021088,12762337.000000,12758135.000000 chr3 14222319 14222421 ME_2259|14222370.420870,23.858923,27.474213,0.072071,16.269693,0.996155,0.000765,0.000785,14225811.000000,14220334.000000 chr3 14988918 14989198 ME_2145|14989058.535185,51.049803,89.174901,0.703758,14.935152,0.965366,0.007365,0.006817,14991097.000000,14985980.000000 chr3 15006884 15007044 ME_2028|15006964.468257,31.866792,47.824466,0.848605,38.600470,0.984033,0.002274,0.007296,15008272.000000,15003709.000000 chr3 15046940 15047217 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chr3 31844417 31844614 ME_2305|31844516.019459,37.633040,61.135537,0.202965,20.169153,0.983235,0.003348,0.003374,31847466.000000,31842500.000000 chr3 31946812 31946957 ME_2263|31946884.927701,29.992950,42.631122,0.131828,27.094814,0.990066,0.002783,0.001843,31950262.000000,31945025.000000 chr3 32371620 32371873 ME_2015|32371746.751758,46.508736,79.985662,0.261980,18.521354,0.973321,0.005327,0.005370,32374162.000000,32369764.000000 chr3 32517098 32517473 ME_2030|32517285.688371,65.472230,122.185197,0.629162,22.375946,0.898077,0.014663,0.049131,32519016.000000,32514485.000000 chr3 33144471 33144565 ME_2174,ME_2080|33144518.252400,20.274452,26.866698,0.945980,11.611293,0.993302,0.000606,0.000601,33148702.000000,33142130.000000 chr3 36202993 36203283 ME_2123|36203138.348651,51.636618,93.034397,0.699265,12.780301,0.961827,0.007802,0.008803,36205177.000000,36200075.000000 chr3 36742197 36742376 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ME_2296|135859189.782978,80.530012,150.428305,0.575683,18.557833,0.863172,0.027911,0.038321,135861142.000000,135856745.000000 chr3 136137000 136137302 ME_2065|136137151.485096,53.582445,96.951560,0.688191,17.677777,0.959950,0.008501,0.007887,136139182.000000,136134365.000000 chr3 136259376 136259796 ME_2294|136259586.153137,73.015674,137.061858,0.599659,17.953709,0.909525,0.018840,0.017909,136261507.000000,136257185.000000 chr3 136340541 136340962 ME_2152|136340751.797382,73.145758,137.146106,0.599601,19.580037,0.908762,0.019613,0.017906,136342732.000000,136338185.000000 chr3 136681478 136681809 ME_2079|136681644.191953,58.207058,107.406230,0.660656,25.383131,0.715040,0.007913,0.254629,136683667.000000,136678895.000000 chr3 137151594 137151672 ME_2202|137151633.332612,18.843576,20.000000,0.970286,42.409020,0.998417,0.000322,0.000315,137153707.000000,137148965.000000 chr3 140230546 140230747 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chr7 21132260 21132386 ME_3050|21132323.511039,26.171015,36.454961,0.129179,177.919253,0.993354,0.001326,0.001360,21135506.000000,21130119.000000 chr7 21260206 21260333 ME_2823|21260270.131957,27.133641,36.431635,0.100166,35.915548,0.993749,0.001243,0.001278,21262736.000000,21258204.000000 chr7 21351482 21351685 ME_2894|21351584.196724,38.264577,62.970946,0.788353,19.713627,0.542977,0.002090,0.448976,21353636.000000,21348174.000000 chr7 22583700 22583876 ME_2839|22583788.390230,34.543074,53.498143,0.176799,24.990885,0.986539,0.002691,0.002698,22586186.000000,22581954.000000 chr7 23429307 23429494 ME_2883|23429401.000637,36.607254,56.767816,0.817387,19.500696,0.985446,0.002959,0.003115,23431451.000000,23426619.000000 chr7 25123058 25123503 ME_3006|25123281.029157,77.399301,145.155434,0.415668,16.830945,0.549184,0.395552,0.015637,25125641.000000,25121409.000000 chr7 26237368 26237778 ME_2901,ME_2849,ME_2981|26237573.644160,76.968766,128.188548,0.183353,121.278199,0.085228,0.000264,0.013949,26243141.000000,26231214.000000 chr7 26250472 26250804 ME_2959|26250638.653418,58.478600,107.521263,0.661730,17.403589,0.552604,0.006325,0.423913,26252650.000000,26246754.000000 chr7 26896649 26897049 ME_2917|26896849.518702,69.454611,130.422351,0.596520,14.026994,0.912049,0.017649,0.023666,26898836.000000,26894319.000000 chr7 27183111 27183533 ME_2946|27183322.634803,73.469575,137.819251,0.402103,22.735515,0.897118,0.027851,0.020873,27185950.000000,27181329.000000 chr7 27645078 27645215 ME_2997|27645146.864004,27.997592,40.434225,0.260967,37.928923,0.992126,0.001573,0.001616,27647891.000000,27643119.000000 chr7 29438239 29438668 ME_2953|29438453.990447,74.481067,140.112230,0.407036,17.897160,0.818232,0.108850,0.020336,29441050.000000,29436473.000000 chr7 29954674 29954803 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ME_2873|138290327.003265,19.120122,20.000000,0.972318,52.857886,0.998431,0.000299,0.000392,138292406.000000,138286854.000000 chr7 138297045 138297204 ME_2920|138297124.512158,31.720028,47.773145,0.847906,29.572406,0.989146,0.002228,0.002157,138299186.000000,138293799.000000 chr7 138304054 138304414 ME_2923|138304234.507269,62.596732,117.852051,0.641529,17.596409,0.937612,0.015485,0.011726,138306251.000000,138301464.000000 chr7 138915814 138916111 ME_2973|138915962.813524,55.045685,93.327867,0.674058,8.182348,0.963939,0.008130,0.006993,138917966.000000,138913104.000000 chr7 139047500 139047827 ME_2881|139047663.757900,58.686430,104.590112,0.662250,237.462641,0.960304,0.008548,0.007840,139049936.000000,139045059.000000 chr7 139090271 139090526 ME_3018|139090398.717689,47.050946,80.566299,0.736785,56.735296,0.635065,0.350894,0.003510,139092476.000000,139087644.000000 chr7 139875351 139875524 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