#---------------------------------------------------- #Date Time : 05/11/2016 16:14:46 #-N : SRR1734841 #-i : #-j : #-ij : /Users/azofeifa/bidirectional_hits_all/bedgraph_files_mouse/SRR1734841.fastqbowtie2.sorted.BedGraph #-k : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/SRR1734841-1_prelim_bidir_hits.bed #-o : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/ #-ns : 100 #-br : 15 #-bct : 1.0 #-elon : 0 #-pad : 2000 #-minK : 1 #-maxK : 1 #-ms_pen : 1 #-mi : 2000 #-ct : 0.0001 #-rounds : 32 #-ALPHA_0 : 10 #-BETA_0 : 10 #-BETA_1 : 100 #-ALPHA_2 : 1 #-ALPHA_3 : 100 #---------------------------------------------------- chr1 564908 564980 ME_65|564944.894823,15.972525,20.000000,0.997504,22.763763,0.999897,0.000022,0.000020,566993.000000,561426.000000 chr1 1475570 1476074 ME_127|1475822.668035,75.163527,176.733333,0.406211,27.780994,0.551631,0.011287,0.412229,1478243.000000,1473771.000000 chr1 1738836 1738909 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ME_1952|153574114.990821,30.295462,35.472444,0.042564,196.104258,0.943883,0.054336,0.000471,153577377.000000,153571885.000000 chr2 154078758 154078848 ME_1743|154078803.206963,23.687027,21.202562,0.915229,11.153150,0.997300,0.000549,0.000538,154080822.000000,154075435.000000 chr2 157198834 157199254 ME_1954|157199044.913498,75.714677,134.247426,0.408470,9.069753,0.755915,0.013576,0.190136,157201452.000000,157197130.000000 chr2 157257700 157257768 ME_1918|157257734.691461,14.033821,20.000000,0.000856,27.814371,0.999958,0.000008,0.000008,157260642.000000,157255750.000000 chr2 159678966 159679071 ME_1785|159679018.623009,23.141204,29.429663,0.922533,20.427768,0.995439,0.000914,0.000912,159680952.000000,159676375.000000 chr2 160118402 160118523 ME_1867|160118463.018936,26.060731,34.212667,0.092315,21.669610,0.922353,0.073400,0.001117,160121847.000000,160117495.000000 chr2 162480678 162481000 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ME_3019|128864880.903476,24.827196,32.326684,0.918063,34.236258,0.952781,0.000978,0.043454,128866932.000000,128861396.000000 chr7 129251515 129251617 ME_3116|129251566.728613,19.753300,31.068515,0.969965,25.907930,0.990756,0.008032,0.000310,129253632.000000,129248096.000000 chr7 129583399 129583647 ME_3126|129583523.366623,49.187001,75.090295,0.332344,3.095307,0.970321,0.006528,0.006077,129586288.000000,129581561.000000 chr7 130753818 130754245 ME_3180|130754031.852651,73.476019,139.916065,0.597408,250.000000,0.910728,0.018438,0.018023,130756198.000000,130751846.000000 chr7 130792739 130793247 ME_3187|130792993.790916,101.924939,152.093448,0.384170,66.371484,0.568579,0.032061,0.374567,130795318.000000,130791055.000000 chr7 133343676 133344024 ME_3043,ME_3000|133343850.764302,60.815864,113.082104,0.351784,13.331802,0.279416,0.003376,0.003785,133347898.000000,133342301.000000 chr7 133346251 133346482 ME_3043,ME_3000|133346366.741678,42.628189,72.797292,0.755242,18.879337,0.686757,0.003559,0.003446,133347898.000000,133342301.000000 chr7 135195014 135195093 ME_2999|135195053.840051,19.639681,20.000000,0.008138,249.987329,0.999583,0.000083,0.000086,135197788.000000,135192776.000000 chr7 135373531 135373840 ME_3120|135373685.797200,54.583514,99.787242,0.320773,18.487100,0.957067,0.008489,0.008978,135376648.000000,135371651.000000 chr7 138145359 138145640 ME_3209|138145500.337803,58.077662,82.427727,0.369907,2.362060,0.963460,0.007865,0.008502,138147973.000000,138143606.000000 chr7 138222011 138222439 ME_3077|138222225.150329,73.474784,140.614994,0.411086,10.082426,0.902878,0.022974,0.020140,138224728.000000,138220271.000000 chr7 138304850 138304939 ME_3191|138304894.686960,20.804336,23.706472,0.051172,24.348547,0.997120,0.000599,0.000577,138308323.000000,138302846.000000 chr7 138705836 138706058 ME_3108|138705947.480665,43.315455,67.706588,0.286342,4.939330,0.911795,0.070788,0.004546,138708988.000000,138703946.000000 chr7 138915850 138915995 ME_3022|138915923.066184,34.777998,38.084196,0.915385,60.917737,0.972880,0.023317,0.000951,138918013.000000,138912566.000000 chr7 139025166 139025233 ME_3065|139025199.929660,13.788922,20.000000,0.998546,249.994549,0.999928,0.000015,0.000014,139027483.000000,139021916.000000 chr7 139044386 139045080 ME_3050|139044733.693383,210.945968,135.934488,0.730063,142.881288,0.970956,0.009200,0.006114,139046818.000000,139041866.000000 chr7 139109632 139109708 ME_3189|139109670.664165,18.209489,20.000000,0.021292,37.611725,0.998889,0.000225,0.000226,139113148.000000,139107986.000000 chr7 139876756 139876896 ME_3115|139876826.295700,35.722608,34.552603,0.065316,83.668516,0.969142,0.000728,0.027948,139880203.000000,139874711.000000 chr7 140179119 140179307 ME_3130|140179213.260196,37.751938,55.988758,0.146314,44.404188,0.982487,0.009669,0.001986,140182393.000000,140177156.000000 chr7 141401933 141402004 ME_3013|141401969.182850,15.679270,20.000000,0.014317,40.357524,0.999257,0.000148,0.000153,141405283.000000,141399911.000000 chr7 141501902 141502037 ME_3021|141501969.732425,27.182388,40.101390,0.819801,59.886061,0.990822,0.001841,0.001928,141504043.000000,141498836.000000 chr7 141508187 141508605 ME_3218|141508396.272255,75.758871,133.396245,0.417958,2.601457,0.905895,0.018264,0.021051,141510838.000000,141506501.000000 chr7 142990180 142990344 ME_3125|142990262.785483,32.456403,49.696139,0.162167,13.701623,0.986986,0.003474,0.002451,142993618.000000,142988216.000000 chr7 143034904 143035001 ME_3151|143034952.892847,22.379770,26.271145,0.057398,14.744543,0.996710,0.000689,0.000663,143038423.000000,143032916.000000 chr7 148389927 148390180 ME_3040|148390054.030864,46.010557,80.299456,0.733827,249.254920,0.948943,0.005707,0.029241,148392328.000000,148387076.000000 chr7 148581314 148581503 ME_3175|148581408.948551,35.882454,58.180162,0.191133,19.395553,0.970002,0.017713,0.003310,148584628.000000,148579361.000000 chr7 148684277 148684407 ME_3135,ME_3011|148684342.552620,29.706729,35.103130,0.072182,41.568414,0.798372,0.000716,0.000717,148688428.000000,148682996.000000 chr7 148686923 148687121 ME_3135,ME_3011|148687022.459893,37.861690,61.519197,0.791269,66.772480,0.194747,0.000726,0.000687,148688428.000000,148682996.000000 chr7 148823048 148823121 ME_3204|148823084.835021,16.472186,20.000000,0.016000,249.968492,0.999160,0.000170,0.000176,148826368.000000,148820816.000000 chr7 148845920 148846099 ME_3188|148846010.080367,34.909597,54.850973,0.181358,13.030547,0.985514,0.003053,0.003052,148849318.000000,148843991.000000 chr7 148892530 148892684 ME_3045|148892607.480935,50.164251,26.994708,0.913952,42.408330,0.998846,0.000237,0.000232,148894663.000000,148889351.000000 chr7 149017842 149018231 ME_3057|149018037.342257,67.556385,126.836883,0.619460,10.493601,0.923701,0.018373,0.014482,149019973.000000,149015546.000000 chr7 149112365 149112440 ME_2991|149112402.991711,17.502753,20.000000,0.015863,145.350953,0.999178,0.000164,0.000167,149114713.000000,149110226.000000 chr7 149157833 149158037 ME_3134|149157935.173654,44.759123,57.271850,0.217991,192.953388,0.818505,0.001563,0.175555,149160703.000000,149155691.000000 chr7 149294819 149295149 ME_3009|149294984.007399,57.995270,107.001746,0.662697,22.634208,0.567335,0.006708,0.408498,149296453.000000,149292221.000000 chr7 149332512 149332583 ME_3032|149332547.718326,15.662664,20.000000,0.986953,249.979043,0.999328,0.000137,0.000134,149334823.000000,149329481.000000 chr7 150102129 150102429 ME_3199|150102279.575287,60.022899,90.245095,0.655886,2.528739,0.960991,0.008327,0.007671,150104263.000000,150099446.000000 chr7 150675230 150675624 ME_3157|150675427.275907,63.340552,133.897350,0.269723,31.616648,0.883035,0.096071,0.005987,150678568.000000,150673346.000000 chr7 150715727 150716224 ME_3041|150715976.319842,68.999339,179.559859,0.787420,31.938713,0.984522,0.003202,0.003749,150718093.000000,150712976.000000 chr7 150755020 150755296 ME_3170|150755158.340550,49.431579,88.518070,0.296928,169.737498,0.937399,0.036746,0.006807,150758083.000000,150752966.000000 chr7 150772611 150773083 ME_3195,ME_3193|150772847.563075,75.803342,159.767910,0.430658,250.000000,0.090894,0.001473,0.001734,150777943.000000,150770711.000000 chr7 150775053 150775193 ME_3195,ME_3193|150775123.402280,29.150215,40.954609,0.127611,14.959888,0.893579,0.001460,0.002101,150777943.000000,150770711.000000 chr7 150783156 150783803 ME_3054|150783480.077399,52.598182,271.056138,0.830821,22.162722,0.986852,0.003080,0.002517,150785608.000000,150780461.000000 chr7 150904914 150905110 ME_3150|150905012.858294,39.090622,59.013772,0.232626,6.518544,0.982000,0.003882,0.003651,150908188.000000,150902996.000000 chr7 150942440 150942663 ME_3067|150942552.361330,45.325708,66.255822,0.808251,85.394370,0.983794,0.003757,0.003299,150944533.000000,150940121.000000 chr7 151722313 151722412 ME_3171|151722362.917271,22.311917,27.427067,0.068112,30.576201,0.995980,0.000836,0.000830,151725808.000000,151721366.000000 chr7 151748325 151748655 ME_3014|151748490.705707,58.032819,106.816319,0.339275,131.932697,0.947855,0.012725,0.010603,151751158.000000,151746776.000000 chr7 151833452 151833713 ME_3008|151833583.249919,47.445373,83.302295,0.713239,7.303206,0.964022,0.008637,0.008877,151834978.000000,151830551.000000 chr7 152133216 152133926 ME_3127|152133571.429445,253.831384,101.097563,0.055062,250.000000,0.996860,0.000604,0.000742,152136718.000000,152131391.000000 chr7 152195533 152195637 ME_3179|152195585.853047,23.344687,28.585476,0.069718,25.865243,0.995823,0.000930,0.000829,152199028.000000,152193536.000000 chr7 152979564 152979641 ME_3107|152979603.467249,18.467968,20.000000,0.966063,22.067023,0.998178,0.000369,0.000363,152981653.000000,152976146.000000 chr7 153663627 153663782 ME_2995|153663704.827951,30.628732,47.005235,0.154178,16.740607,0.988912,0.002200,0.002290,153666043.000000,153661736.000000 chr7 155493187 155493443 ME_3006|155493315.639733,46.445203,81.812085,0.272704,14.876630,0.967625,0.008927,0.006138,155496073.000000,155491286.000000 chr7 156794148 156794421 ME_3196|156794284.942439,49.089578,87.611201,0.288488,33.934653,0.745839,0.232043,0.006962,156797608.000000,156792251.000000 chr7 157253820 157254132 ME_3035|157253976.214257,71.574690,84.271547,0.730780,28.023129,0.977079,0.004850,0.004518,157256008.000000,157250951.000000 chr8 1711658 1712025 ME_3352|1711842.266948,56.702462,126.928837,0.258721,24.464759,0.972109,0.005086,0.007545,1714926.000000,1709765.000000 chr8 3567131 3567444 ME_3255|3567287.801486,55.260743,100.976103,0.322973,15.777722,0.931501,0.033652,0.009586,3570022.000000,3565805.000000 chr8 4889283 4889362 ME_3250|4889322.991511,19.765829,20.000000,0.964307,25.804909,0.998079,0.000387,0.000383,4891357.000000,4886675.000000 chr8 5639515 5639894 ME_3376|5639705.174251,65.905386,123.443077,0.388399,231.140249,0.930678,0.013659,0.015024,5642182.000000,5637470.000000 chr8 5748598 5748944 ME_3302|5748771.604341,60.640169,112.482180,0.350020,17.648547,0.934797,0.020910,0.011947,5751652.000000,5747030.000000 chr8 6483853 6484316 ME_3347|6484084.820499,80.734845,150.778433,0.426148,9.173557,0.805561,0.099726,0.026947,6486472.000000,6482180.000000 chr8 8847825 8848225 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ME_3342|20538234.329350,13.206683,20.000000,0.000360,27.688297,0.999982,0.000004,0.000004,20541232.000000,20536235.000000 chr8 21847236 21847611 ME_3346|21847424.139162,65.098191,122.673096,0.371126,9.437136,0.921159,0.025805,0.014070,21850237.000000,21845420.000000 chr8 21988499 21988863 ME_3331|21988681.669780,64.440095,117.812046,0.316129,80.695444,0.958061,0.007253,0.013080,21991567.000000,21986570.000000 chr8 22113753 22113833 ME_3239|22113793.431156,19.616608,20.000000,0.025124,19.765012,0.998674,0.000264,0.000270,22117072.000000,22111745.000000 chr8 22153542 22153637 ME_3229|22153589.984211,22.062381,24.963177,0.057498,21.803026,0.996758,0.000647,0.000654,22156537.000000,22151555.000000 chr8 22474335 22474565 ME_3345,ME_3315|22474450.158005,42.589143,72.331166,0.240722,16.555090,0.700398,0.003873,0.003434,22478062.000000,22472540.000000 chr8 22475601 22475954 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ME_3254|26434971.674036,24.251121,32.631757,0.904579,13.624145,0.994227,0.001296,0.001119,26436997.000000,26431655.000000 chr8 26846045 26846434 ME_3300|26846239.815683,72.221706,122.244253,0.404737,2.261586,0.924160,0.014772,0.016753,26848762.000000,26844320.000000 chr8 28476726 28476783 ME_3297,ME_3326|28476754.996943,4.291464,24.034171,0.999054,12.070066,0.521282,0.000005,0.000005,28480926.000000,28473245.000000 chr8 28477371 28477446 ME_3297,ME_3326|28477409.112387,17.168171,20.000000,0.001031,23.011431,0.478669,0.000005,0.000005,28480926.000000,28473245.000000 chr8 28905953 28906323 ME_3339|28906138.610678,64.431677,120.462263,0.368151,14.360440,0.890707,0.058091,0.014410,28908951.000000,28904615.000000 chr8 28943254 28943335 ME_3349|28943295.170508,19.459282,21.279635,0.048143,41.091267,0.997904,0.000418,0.000427,28946737.000000,28941230.000000 chr8 29207508 29207858 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