#---------------------------------------------------- #Date Time : 05/11/2016 19:35:20 #-N : SRR930701 #-i : #-j : #-ij : /Users/azofeifa/bidirectional_hits_all/bedgraph_files_mouse/SRR930701.fastqbowtie2.sorted.BedGraph #-k : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/SRR930701-1_prelim_bidir_hits.bed #-o : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/ #-ns : 100 #-br : 15 #-bct : 1.0 #-elon : 0 #-pad : 2000 #-minK : 1 #-maxK : 1 #-ms_pen : 1 #-mi : 2000 #-ct : 0.0001 #-rounds : 32 #-ALPHA_0 : 10 #-BETA_0 : 10 #-BETA_1 : 100 #-ALPHA_2 : 1 #-ALPHA_3 : 100 #---------------------------------------------------- chr1 24615885 24616462 ME_24|24616174.003126,62.275913,226.391049,0.011704,144.084601,0.497601,0.000060,0.502160,24619296.000000,24613804.000000 chr1 36273409 36273682 ME_21|36273546.270732,46.923132,89.726085,0.248702,126.914279,0.934999,0.004518,0.046938,36276516.000000,36271324.000000 chr1 39577025 39577579 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ME_298|121864559.639819,55.674367,95.342713,0.672881,8.332958,0.958880,0.008782,0.008084,121866648.000000,121861651.000000 chr5 122849756 122850313 ME_301|122850035.138197,86.730074,192.033809,0.626077,250.000000,0.846211,0.106072,0.011989,122852388.000000,122847601.000000 chr5 123627919 123627993 ME_296|123627956.809886,14.634696,22.385408,0.975237,236.012905,0.998687,0.000263,0.000278,123630273.000000,123624736.000000 chr5 129789452 129789578 ME_295|129789515.218001,27.293423,35.816114,0.933293,38.932763,0.995996,0.000908,0.000798,129790878.000000,129786151.000000 chr5 137628692 137629235 ME_300|137628964.058378,89.739515,181.512114,0.599226,250.000000,0.875247,0.063457,0.015813,137631273.000000,137626681.000000 chr5 138754588 138755724 ME_304|138755156.454849,351.349605,216.371822,0.798474,250.000000,0.980413,0.007040,0.003964,138757368.000000,138752296.000000 chr5 145127629 145128022 ME_307|145127825.657520,66.006498,130.552926,0.716894,49.778477,0.949812,0.025579,0.006152,145129863.000000,145125601.000000 chr6 24649490 24649719 ME_308|24649604.969880,42.343099,71.845180,0.754103,13.578556,0.974921,0.004805,0.006458,24651707.000000,24646485.000000 chr6 38533844 38533968 ME_309|38533906.685113,25.990526,35.812410,0.895984,21.492226,0.993604,0.001310,0.001272,38536022.000000,38530605.000000 chr6 51469741 51470287 ME_310|51470014.348056,75.184521,197.869913,0.367167,181.986532,0.896781,0.030933,0.042088,51472472.000000,51467730.000000 chr6 108828130 108828986 ME_312|108828558.827567,192.490412,235.492002,0.597332,250.000000,0.890489,0.020740,0.054573,108830656.000000,108826395.000000 chr6 113077078 113077604 ME_311|113077341.578416,89.529922,173.119880,0.440939,179.191528,0.377371,0.100704,0.494213,113079556.000000,113075115.000000 chr7 3703868 3704155 ME_325|3704012.222935,47.502867,95.873259,0.878736,72.543904,0.930719,0.063255,0.001564,3706213.000000,3700796.000000 chr7 4136573 4137017 ME_328|4136795.249807,72.039388,150.142612,0.617893,250.000000,0.805423,0.143716,0.014555,4139128.000000,4134326.000000 chr7 4147358 4147718 ME_333|4147538.406798,101.407145,78.817079,0.894295,250.000000,0.992918,0.001765,0.001329,4149838.000000,4145441.000000 chr7 5061437 5062111 ME_329|5061774.513666,174.531596,162.786917,0.605473,104.986550,0.591247,0.380942,0.008731,5063878.000000,5059376.000000 chr7 25686699 25687495 ME_346|25687097.745930,195.554413,202.326148,0.733379,250.000000,0.970257,0.007905,0.006090,25689418.000000,25684406.000000 chr7 27532352 27532756 ME_316|27532554.601250,134.616057,67.544785,0.079307,250.000000,0.994829,0.000937,0.001424,27535333.000000,27530201.000000 chr7 28351434 28351539 ME_326|28351486.919733,23.570244,28.705170,0.958063,34.332068,0.997531,0.000633,0.000467,28353613.000000,28348076.000000 chr7 29180208 29180704 ME_341|29180456.817611,85.266794,162.842061,0.427814,44.084064,0.558434,0.016072,0.377279,29182753.000000,29178401.000000 chr7 30414378 30414543 ME_322,ME_317|30414460.760028,33.675238,48.766676,0.867079,64.983394,0.509919,0.248647,0.000960,30419518.000000,30411146.000000 chr7 44248015 44248137 ME_318|44248076.701863,25.865874,34.948089,0.909198,17.609501,0.868287,0.127735,0.001092,44250178.000000,44244701.000000 chr7 45394670 45395003 ME_339|45394837.054201,57.222171,108.952927,0.323525,23.429815,0.951961,0.010317,0.011782,45397888.000000,45392756.000000 chr7 45458268 45458475 ME_345,ME_337|45458372.218501,55.110115,48.529399,0.046752,231.950864,0.659037,0.000347,0.000370,45462943.000000,45456191.000000 chr7 45459705 45459928 ME_345,ME_337|45459817.252167,41.508193,69.940416,0.116979,101.586905,0.222827,0.000348,0.115035,45462943.000000,45456191.000000 chr7 46450357 46450441 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