#---------------------------------------------------- #Date Time : 05/11/2016 19:38:08 #-N : SRR930705 #-i : #-j : #-ij : /Users/azofeifa/bidirectional_hits_all/bedgraph_files_mouse/SRR930705.fastqbowtie2.sorted.BedGraph #-k : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/SRR930705-1_prelim_bidir_hits.bed #-o : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/ #-ns : 100 #-br : 15 #-bct : 1.0 #-elon : 0 #-pad : 2000 #-minK : 1 #-maxK : 1 #-ms_pen : 1 #-mi : 2000 #-ct : 0.0001 #-rounds : 32 #-ALPHA_0 : 10 #-BETA_0 : 10 #-BETA_1 : 100 #-ALPHA_2 : 1 #-ALPHA_3 : 100 #---------------------------------------------------- chr1 39543970 39544252 ME_19|39544111.722968,50.170630,90.900021,0.300577,7.833490,0.955471,0.015272,0.007817,39547131.000000,39542329.000000 chr1 39577127 39577586 ME_14|39577357.160620,78.886935,150.538013,0.247720,186.286853,0.831181,0.005671,0.151164,39580221.000000,39575044.000000 chr1 43933592 43934094 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ME_324|28351485.263286,25.565053,32.223322,0.944969,38.542495,0.990646,0.006885,0.000632,28353612.000000,28348090.000000 chr7 28378317 28378875 ME_348|28378596.924863,97.655903,181.284181,0.402696,250.000000,0.479177,0.016621,0.475962,28380807.000000,28376290.000000 chr7 28810458 28811010 ME_337|28810734.771260,94.768388,181.237031,0.567620,250.000000,0.888472,0.032988,0.022114,28812987.000000,28808740.000000 chr7 28867972 28868219 ME_321|28868096.003909,44.339887,79.398226,0.725810,1.198348,0.969265,0.006296,0.006891,28869867.000000,28865005.000000 chr7 30194073 30194477 ME_349|30194275.656221,70.608243,131.158108,0.387426,250.000000,0.901898,0.013140,0.045942,30196707.000000,30191950.000000 chr7 30413520 30413950 ME_335,ME_326|30413735.435038,72.013183,142.631971,0.615484,35.372501,0.082181,0.179887,0.001346,30419502.000000,30411130.000000 chr7 30414216 30414542 ME_335,ME_326|30414379.495578,60.878681,101.951303,0.699671,106.126622,0.180287,0.546878,0.001346,30419502.000000,30411130.000000 chr7 44248014 44248136 ME_330|44248075.460629,25.784537,34.917455,0.904447,21.407901,0.740119,0.256285,0.000976,44250177.000000,44244700.000000 chr7 45324750 45325248 ME_334|45324999.429149,99.544825,149.768916,0.623280,75.283156,0.914079,0.016158,0.029463,45327132.000000,45322435.000000 chr7 79466132 79466465 ME_327|79466298.947359,58.576068,108.204306,0.652757,107.936789,0.948930,0.010965,0.010047,79468497.000000,79463545.000000 chr7 80803090 80803476 ME_344|80803283.187704,65.818350,127.171932,0.361073,21.235340,0.887041,0.010997,0.068973,80806017.000000,80801170.000000 chr7 81858656 81859220 ME_339|81858938.641284,108.580005,173.207118,0.576626,142.473234,0.809190,0.091482,0.034078,81860982.000000,81856750.000000 chr7 99482868 99482996 ME_345|99482932.324097,29.201625,34.558966,0.030853,34.699331,0.981607,0.000336,0.017088,99486327.000000,99480805.000000 chr7 101361698 101362143 ME_332|101361921.103096,75.491410,146.823345,0.609131,77.254909,0.871367,0.069916,0.014696,101364057.000000,101359525.000000 chr7 101372638 101373250 ME_347|101372944.543721,141.218011,164.598783,0.634186,241.954018,0.918737,0.031844,0.012355,101375157.000000,101370610.000000 chr7 104423225 104423312 ME_329|104423268.879490,20.719403,22.534569,0.961490,34.971583,0.997662,0.000427,0.000663,104425392.000000,104419870.000000 chr7 109520046 109520155 ME_331|109520100.821154,27.157596,27.630548,0.981832,45.759614,0.842287,0.157076,0.000160,109522242.000000,109516675.000000 chr7 110060003 110060195 ME_341|110060099.442057,24.732442,70.890819,0.024350,245.161501,0.998648,0.000313,0.000272,110063262.000000,110057725.000000 chr7 111082894 111083319 ME_351|111083106.968454,71.916757,140.753913,0.365747,98.954554,0.810554,0.009900,0.150083,111085737.000000,111080905.000000 chr7 116333209 116333295 ME_350|116333252.748450,19.936148,22.856717,0.035096,21.180208,0.997940,0.000386,0.000545,116336682.000000,116331144.000000 chr7 118153051 118153472 ME_354|118153262.235656,68.660851,141.964839,0.591658,250.000000,0.937045,0.011042,0.019316,118155507.000000,118151230.000000 chr7 120917341 120917606 ME_325|120917473.748805,47.519327,84.921756,0.716375,29.407655,0.913409,0.062801,0.005948,120919587.000000,120914694.000000 chr7 121064437 121065488 ME_346|121064962.915553,344.575172,180.725918,0.276652,250.000000,0.966392,0.006499,0.009743,121067621.000000,121062819.000000 chr7 123369775 123370289 ME_352|123370032.265090,86.920783,169.825522,0.439121,140.103995,0.693888,0.022817,0.226831,123372252.000000,123367840.000000 chr7 126585482 126586014 ME_353|126585748.677156,93.247070,172.444869,0.586554,124.687590,0.276584,0.662634,0.042502,126587967.000000,126583240.000000 chr7 130390036 130390153 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