#---------------------------------------------------- #Date Time : 05/11/2016 19:39:39 #-N : SRR930709 #-i : #-j : #-ij : /Users/azofeifa/bidirectional_hits_all/bedgraph_files_mouse/SRR930709.fastqbowtie2.sorted.BedGraph #-k : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/SRR930709-1_prelim_bidir_hits.bed #-o : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/ #-ns : 100 #-br : 15 #-bct : 1.0 #-elon : 0 #-pad : 2000 #-minK : 1 #-maxK : 1 #-ms_pen : 1 #-mi : 2000 #-ct : 0.0001 #-rounds : 32 #-ALPHA_0 : 10 #-BETA_0 : 10 #-BETA_1 : 100 #-ALPHA_2 : 1 #-ALPHA_3 : 100 #---------------------------------------------------- chr1 9942478 9942624 ME_11|9942551.720289,29.433070,43.587426,0.138194,19.961254,0.981260,0.011226,0.001903,9945792.000000,9940450.000000 chr1 24615969 24616283 ME_12|24616126.389619,29.982428,127.365169,0.024821,147.308340,0.317092,0.000083,0.682577,24619227.000000,24613780.000000 chr1 34435065 34435140 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ME_120|109105418.050871,74.134131,138.924813,0.403792,16.208664,0.894751,0.028245,0.021832,109107971.000000,109103664.000000 chr14 22802038 22802475 ME_137|22802256.868516,74.072503,144.153144,0.413077,222.063887,0.849180,0.080841,0.018381,22804575.000000,22799998.000000 chr14 31515130 31515431 ME_146|31515280.966779,52.922518,97.725299,0.670677,108.360008,0.957220,0.009086,0.008443,31517475.000000,31512463.000000 chr14 32192079 32192446 ME_138|32192263.210513,65.880788,117.671590,0.346055,250.000000,0.939637,0.019961,0.010919,32194875.000000,32189923.000000 chr14 47373606 47374080 ME_135|47373843.255470,81.338085,155.903396,0.571335,12.943985,0.811589,0.086085,0.035862,47375850.000000,47371528.000000 chr14 50807479 50808164 ME_140|50807822.074486,322.682140,20.000000,0.002532,222.257807,0.999868,0.000025,0.000031,50811090.000000,50805538.000000 chr14 51063801 51063913 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ME_259|121864549.064156,53.046637,91.448235,0.693698,12.346053,0.963354,0.007798,0.007212,121866640.000000,121861552.000000 chr5 122727954 122728576 ME_273|122728265.325919,134.938579,176.324363,0.605583,244.056694,0.916228,0.019259,0.020348,122730460.000000,122725973.000000 chr5 125409040 125409141 ME_257,ME_272|125409090.981496,22.223951,27.991393,0.059490,35.332186,0.462352,0.000320,0.328493,125411935.000000,125404838.000000 chr5 125409193 125409332 ME_257,ME_272|125409262.947281,28.577278,40.948739,0.620244,201.380588,0.205648,0.000321,0.000994,125411935.000000,125404838.000000 chr5 135875457 135875773 ME_266|135875615.344946,55.759842,101.959848,0.675039,22.281491,0.955479,0.009374,0.008787,135877720.000000,135872708.000000 chr5 135990305 135990408 ME_256|135990357.183884,22.834312,28.609777,0.929632,19.814543,0.995953,0.000817,0.000840,135992455.000000,135986963.000000 chr5 137452917 137453104 ME_262|137453011.142415,36.279099,56.943658,0.814347,22.356446,0.985381,0.003014,0.002901,137455120.000000,137450108.000000 chr5 145127517 145127888 ME_270|145127703.362114,73.697857,111.764076,0.716375,168.312595,0.966650,0.008173,0.006294,145129930.000000,145125713.000000 chr6 13549164 13549335 ME_278|13549250.224208,33.418572,52.296429,0.830222,249.853659,0.937883,0.002770,0.052168,13551586.000000,13546244.000000 chr6 38533883 38533964 ME_279|38533923.605110,20.478958,20.000000,0.953815,17.367300,0.998684,0.000265,0.000270,38536021.000000,38530544.000000 chr6 47781569 47781648 ME_282|47781609.052241,19.129847,20.000000,0.993734,49.311965,0.957452,0.000067,0.042299,47782426.000000,47778209.000000 chr6 49050246 49051754 ME_280|49051000.530770,31.949907,722.414653,0.980417,19.829256,0.998764,0.000422,0.000204,49053871.000000,49048094.000000 chr6 67205518 67205701 ME_285|67205610.054508,35.415380,56.070353,0.198733,79.120724,0.938525,0.050523,0.002784,67208701.000000,67203449.000000 chr6 72562561 72563017 ME_284|72562789.414882,80.341687,147.270990,0.582906,17.441121,0.888974,0.023773,0.021813,72564766.000000,72560504.000000 chr6 72806703 72806776 ME_277|72806739.734351,16.444641,20.000000,0.997101,249.996406,0.999854,0.000030,0.000029,72809071.000000,72803504.000000 chr6 86521966 86522140 ME_283|86522053.610353,34.311477,52.475537,0.826062,39.992660,0.986971,0.002684,0.002587,86524186.000000,86518859.000000 chr6 97154791 97155139 ME_281|97154965.522213,61.084448,113.046963,0.650030,16.290860,0.934522,0.011583,0.021573,97157056.000000,97152164.000000 chr6 128315581 128315769 ME_276|128315675.213234,36.045074,57.743617,0.192072,20.351395,0.984634,0.003061,0.003120,128317981.000000,128313568.000000 chr7 3706452 3706828 ME_299|3706640.627600,67.701710,120.389594,0.648458,78.022939,0.934864,0.019398,0.012959,3708794.000000,3703977.000000 chr7 4147081 4147712 ME_315|4147396.884073,182.302387,133.499374,0.788313,250.000000,0.980996,0.004651,0.003588,4149674.000000,4144842.000000 chr7 6088818 6089229 ME_304|6089024.001033,71.455325,133.881470,0.605885,17.268864,0.914592,0.018568,0.016710,6091094.000000,6086427.000000 chr7 19301149 19301297 ME_303|19301223.718284,30.047418,44.023716,0.862555,36.343641,0.990563,0.001940,0.001874,19303349.000000,19298367.000000 chr7 27150682 27151085 ME_306|27150884.029294,69.795225,131.251729,0.560090,169.570672,0.918256,0.017530,0.016454,27153134.000000,27148572.000000 chr7 28372846 28373096 ME_296|28372971.375165,45.948824,79.270281,0.730891,25.426646,0.973143,0.005658,0.005305,28375079.000000,28369902.000000 chr7 30417132 30417511 ME_307|30417321.737089,71.855119,117.566296,0.669545,96.170232,0.952270,0.010134,0.010025,30419504.000000,30414521.000000 chr7 34283145 34283393 ME_305|34283269.433952,45.250230,78.729660,0.736623,20.253700,0.972792,0.005672,0.005384,34285379.000000,34280892.000000 chr7 35234807 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ME_312|92571630.727375,55.072229,104.149395,0.325471,42.990969,0.938893,0.008227,0.028251,92574509.000000,92569497.000000 chr7 97081170 97081726 ME_323|97081448.501009,94.652000,182.905416,0.559018,250.000000,0.792130,0.131428,0.020978,97083674.000000,97079427.000000 chr7 98092967 98093207 ME_300|98093087.424100,44.798790,75.082462,0.758845,37.041035,0.977077,0.004801,0.004530,98095214.000000,98089962.000000 chr7 98815709 98815834 ME_317|98815772.379453,26.382527,36.158716,0.096705,44.486754,0.994024,0.001190,0.001215,98818304.000000,98813727.000000 chr7 100498997 100499525 ME_310|100499261.175098,88.366711,175.520278,0.592091,109.301297,0.649245,0.294485,0.014067,100501379.000000,100496997.000000 chr7 104422987 104423106 ME_294|104423046.531587,25.496486,33.994219,0.906757,249.820026,0.988883,0.001231,0.006490,104425379.000000,104419917.000000 chr7 104427729 104428173 ME_309|104427951.904604,79.382360,142.658960,0.591252,14.262717,0.899135,0.022079,0.019696,104429999.000000,104425467.000000 chr7 106300784 106300989 ME_292|106300886.994148,38.794487,63.515434,0.791392,16.329506,0.982506,0.003635,0.003500,106302989.000000,106297677.000000 chr7 110022922 110023364 ME_311|110023143.573211,77.182468,143.981806,0.583924,32.781406,0.895078,0.022964,0.020545,110025209.000000,110020767.000000 chr7 110046216 110046398 ME_301|110046307.411532,42.249061,49.039851,0.888649,129.202940,0.992887,0.001503,0.001403,110048534.000000,110043087.000000 chr7 110059791 110059953 ME_286,ME_313|110059872.920985,22.758366,58.216105,0.034587,14.492195,0.995732,0.000379,0.000394,110063264.000000,110057742.000000 chr7 117742805 117743420 ME_308|117743113.171033,112.989765,194.214248,0.515322,250.000000,0.053211,0.922925,0.006066,117745453.000000,117741101.000000 chr7 118853123 118853739 ME_302|118853431.551311,86.477848,221.868763,0.403200,101.584699,0.884674,0.027114,0.040055,118855724.000000,118851297.000000 chr7 120917425 120917555 ME_290,ME_318,ME_287,ME_291|120917490.499045,27.642783,37.004654,0.901941,36.168022,0.323833,0.000411,0.000395,120922064.000000,120914412.000000 chr7 120918760 120918910 ME_290,ME_318,ME_287,ME_291|120918835.446198,28.488698,46.840344,0.052911,32.615638,0.667149,0.000402,0.000407,120922064.000000,120914412.000000 chr7 126585060 126585656 ME_322|126585358.221170,107.254656,190.913399,0.531035,46.840953,0.121855,0.841456,0.011034,126587503.000000,126582897.000000 chr7 126591472 126591852 ME_321|126591662.538793,62.982611,127.098713,0.382037,236.495571,0.917798,0.039919,0.011204,126594164.000000,126589332.000000 chr7 130390073 130390139 ME_295|130390106.666917,12.878715,20.000000,0.995244,23.463345,0.999759,0.000049,0.000048,130392209.000000,130386642.000000 chr7 130834354 130834459 ME_298|130834407.089881,32.900967,20.000000,0.999871,91.687941,0.999993,0.000001,0.000001,130836584.000000,130832037.000000 chr7 142387785 142387945 ME_314|142387865.468067,32.396777,47.922437,0.148488,44.471519,0.987157,0.003425,0.003176,142391129.000000,142386507.000000 chr7 143531420 143531674 ME_320|143531547.569061,47.129688,79.650933,0.260843,43.574657,0.975250,0.004895,0.005200,143534594.000000,143529417.000000 chr8 7391843 7392285 ME_351|7392064.246598,76.795232,144.056373,0.413675,17.051697,0.892956,0.020895,0.023464,7394509.000000,7390022.000000 chr8 7428202 7428527 ME_341|7428364.767475,57.172388,105.326862,0.333652,10.783452,0.948874,0.012518,0.010343,7431289.000000,7426277.000000 chr8 25640793 25641248 ME_349|25641020.942728,83.204889,144.647893,0.596214,91.780234,0.904276,0.021384,0.018585,25643119.000000,25638707.000000 chr8 41340942 41341594 ME_334|41341268.418745,112.893066,213.054829,0.455976,0.000000,0.342684,0.020252,0.589446,41343619.000000,41339252.000000 chr8 52815494 52815656 ME_328|52815575.216820,32.387972,48.689292,0.836217,45.318776,0.988077,0.002459,0.002366,52817704.000000,52812317.000000 chr8 68880373 68880661 ME_329|68880517.594547,58.738688,84.890314,0.821487,77.882891,0.985791,0.003031,0.002990,68882704.000000,68877347.000000 chr8 68887034 68887472 ME_333|68887253.170308,78.993009,140.126960,0.602465,180.955385,0.906143,0.030796,0.015821,68889499.000000,68884817.000000 chr8 68904300 68904853 ME_332|68904576.914468,161.202561,115.191898,0.890395,250.000000,0.244555,0.754071,0.000346,68906989.000000,68901842.000000 chr8 73207403 73207871 ME_335|73207637.686562,81.345698,152.362616,0.571978,9.450261,0.856817,0.029153,0.040009,73209649.000000,73205282.000000 chr8 73510666 73510864 ME_325|73510765.622627,37.900175,61.171789,0.204226,21.285788,0.982932,0.003382,0.003540,73513534.000000,73508657.000000 chr8 77388546 77388970 ME_343|77388758.354965,73.737427,138.551765,0.403656,12.563651,0.895734,0.028620,0.020508,77391319.000000,77386697.000000 chr8 83170817 83170991 ME_344|83170904.866625,51.286509,35.640580,0.023491,104.037453,0.998767,0.000247,0.000259,83174239.000000,83168702.000000 chr8 84846655 84847165 ME_338|84846910.198969,86.336905,168.752783,0.437215,16.776407,0.466875,0.015102,0.474010,84849319.000000,84844832.000000 chr8 85084210 85084762 ME_340|85084486.896199,96.017857,180.016940,0.543473,127.276379,0.250029,0.695873,0.016775,85086649.000000,85082267.000000 chr8 94704037 94704136 ME_346|94704087.112161,22.433686,26.924605,0.047266,23.207051,0.997395,0.000520,0.000523,94706854.000000,94702037.000000 chr8 102141351 102141762 ME_345|102141556.965822,71.538706,134.357855,0.395723,13.719323,0.904542,0.025687,0.019244,102144184.000000,102139487.000000 chr8 105172438 105172518 ME_326|105172478.485154,17.951143,22.378702,0.960269,17.039718,0.997815,0.000463,0.000430,105174574.000000,105169052.000000 chr8 109839124 109839380 ME_330|109839252.357011,46.269017,81.694765,0.733042,17.071626,0.967695,0.010261,0.005511,109841359.000000,109836541.000000 chr8 110631258 110631407 ME_352|110631332.540209,29.978233,44.527093,0.137258,21.085950,0.417450,0.000809,0.579376,110634364.000000,110629366.000000 chr8 111062490 111062588 ME_327|111062539.849832,20.342474,28.788378,0.954677,14.862642,0.997481,0.000532,0.000497,111064639.000000,111059116.000000 chr8 111644455 111644904 ME_331|111644680.160818,78.712513,145.604096,0.584640,28.807840,0.890606,0.024077,0.021329,111646714.000000,111642272.000000 chr8 115423023 115423461 ME_342|115423242.473461,78.601442,140.760474,0.398882,119.790626,0.910044,0.017602,0.019547,115425649.000000,115421087.000000 chr8 122359586 122359917 ME_337|122359752.001258,58.001126,107.182861,0.661870,9.078826,0.950204,0.010509,0.009822,122361843.000000,122356862.000000 chr8 122432937 122433302 ME_339|122433120.139312,63.849871,118.803399,0.366429,186.046472,0.930363,0.012162,0.021046,122435689.000000,122430857.000000 chr8 123545656 123545730 ME_350|123545693.829312,17.035774,20.000000,0.010511,16.567996,0.827465,0.000089,0.172180,123548343.000000,123543691.000000 chr8 123557563 123557643 ME_353|123557603.506835,19.961447,20.408518,0.032980,41.121524,0.329672,0.000116,0.669864,123560493.000000,123555722.000000 chr8 123618610 123618699 ME_348|123618655.146008,22.442014,21.964056,0.031191,32.007070,0.378015,0.000126,0.621482,123621034.000000,123616832.000000 chr8 123623685 123623802 ME_324|123623744.231938,25.053369,33.554730,0.091847,37.798755,0.292584,0.000329,0.706101,123626314.000000,123621677.000000 chr8 125175680 125176153 ME_347|125175917.112753,82.025759,154.419354,0.430221,250.000000,0.873429,0.024913,0.028223,125178049.000000,125173652.000000 chr8 126137285 126137689 ME_336|126137487.756631,71.110265,130.951286,0.603533,7.687105,0.915527,0.018705,0.016442,126139549.000000,126134882.000000 chr9 40803524 40803600 ME_356|40803562.298885,17.853800,20.000000,0.990774,35.058567,0.419285,0.580557,0.000040,40805265.000000,40800298.000000 chr9 62774722 62774992 ME_357|62774857.476782,48.695827,86.435421,0.710009,15.783525,0.967968,0.006666,0.006349,62776950.000000,62772223.000000 chr9 65202022 65202099 ME_361|65202061.180825,18.345408,20.000000,0.003328,249.992912,0.999831,0.000034,0.000035,65205285.000000,65199718.000000 chr9 67050304 67050540 ME_355|67050422.680391,43.390038,74.436956,0.749802,25.217829,0.969150,0.005146,0.011217,67052220.000000,67047298.000000 chr9 70554368 70554437 ME_354|70554403.111804,14.104071,20.194925,0.990112,249.843311,0.999492,0.000103,0.000102,70556430.000000,70551178.000000 chr9 70605332 70605701 ME_360|70605517.007190,64.022896,120.282855,0.351453,250.000000,0.883573,0.020241,0.072828,70608105.000000,70603183.000000 chr9 123872827 123873148 ME_358|123872988.034924,61.958442,98.660315,0.627978,0.610300,0.944223,0.010165,0.017703,123875024.000000,123870358.000000 chr9 124256043 124256906 ME_362,ME_359|124256474.782886,299.291359,132.131993,0.937733,250.000000,0.574335,0.000450,0.000327,124258860.000000,124253428.000000 chr9 124257279 124257512 ME_362,ME_359|124257396.291643,35.539397,80.786547,0.926499,192.353948,0.422249,0.000380,0.000344,124258860.000000,124253428.000000 chrX 7306754 7307096 ME_376|7306925.522454,60.578586,110.455462,0.350980,9.184429,0.945573,0.010662,0.011780,7309775.000000,7304838.000000 chrX 8092447 8092879 ME_371|8092663.370621,75.278282,140.984119,0.592991,12.647830,0.890768,0.022065,0.029939,8094725.000000,8090118.000000 chrX 16434936 16435324 ME_367|16435130.489224,68.328042,125.221765,0.617079,8.954121,0.926535,0.016161,0.014326,16437200.000000,16432443.000000 chrX 40948159 40948382 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