#---------------------------------------------------- #Date Time : 05/11/2016 19:39:34 #-N : SRR930711 #-i : #-j : #-ij : /Users/azofeifa/bidirectional_hits_all/bedgraph_files_mouse/SRR930711.fastqbowtie2.sorted.BedGraph #-k : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/SRR930711-1_prelim_bidir_hits.bed #-o : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/ #-ns : 100 #-br : 15 #-bct : 1.0 #-elon : 0 #-pad : 2000 #-minK : 1 #-maxK : 1 #-ms_pen : 1 #-mi : 2000 #-ct : 0.0001 #-rounds : 32 #-ALPHA_0 : 10 #-BETA_0 : 10 #-BETA_1 : 100 #-ALPHA_2 : 1 #-ALPHA_3 : 100 #---------------------------------------------------- chr1 8988857 8989167 ME_2|8989012.247880,53.964063,100.986754,0.685227,13.030017,0.957525,0.008579,0.010279,8991104.000000,8986047.000000 chr1 9942483 9942620 ME_17|9942552.196442,27.995553,40.411233,0.123826,20.956638,0.985555,0.007807,0.001780,9945869.000000,9940452.000000 chr1 13589580 13589966 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ME_266|28372980.145409,38.224402,61.405453,0.793400,21.378906,0.982766,0.003508,0.003720,28375090.000000,28369778.000000 chr7 30417101 30417539 ME_247|30417320.909496,79.593136,139.373967,0.610171,85.538489,0.910868,0.018575,0.023190,30419455.000000,30414728.000000 chr7 35234795 35234908 ME_259|35234852.191765,24.979376,31.739953,0.081094,32.810728,0.995214,0.000951,0.000981,35238220.000000,35232743.000000 chr7 41165679 41166005 ME_264|41165842.483846,57.417420,105.183710,0.332590,16.559203,0.949318,0.012183,0.010488,41168770.000000,41164118.000000 chr7 45394645 45394980 ME_269|45394812.929603,58.927379,108.237849,0.341639,11.175295,0.926176,0.033259,0.010915,45397765.000000,45392738.000000 chr7 45459648 45459884 ME_260|45459766.256029,43.605749,74.430971,0.237710,35.656735,0.195081,0.000864,0.801463,45462940.000000,45457688.000000 chr7 58399027 58399125 ME_243|58399076.553235,22.652839,26.786476,0.938427,248.368613,0.996526,0.000708,0.000692,58401400.000000,58395892.000000 chr7 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ME_252|106300758.890191,65.806137,123.024849,0.624153,115.712615,0.931603,0.014916,0.013390,106302940.000000,106298123.000000 chr7 109520029 109520162 ME_249|109520095.929795,29.551364,37.334998,0.922935,39.202332,0.798009,0.199069,0.000743,109522225.000000,109516733.000000 chr7 109774622 109774859 ME_268|109774740.881708,43.514060,74.845058,0.249560,22.816669,0.974748,0.005650,0.005105,109777885.000000,109772633.000000 chr7 110046275 110046437 ME_241|110046356.506432,35.708830,45.458175,0.893733,73.395873,0.992911,0.001639,0.001437,110047614.000000,110043068.000000 chr7 110059788 110059964 ME_237|110059876.404976,26.092053,61.557458,0.049307,23.792361,0.997221,0.000545,0.000599,110062270.000000,110057737.000000 chr7 116333380 116333631 ME_262|116333506.316568,45.837730,79.580536,0.263382,249.099135,0.972216,0.005861,0.005781,116336395.000000,116331562.000000 chr7 117753753 117754532 ME_250|117754143.327880,223.934882,165.617447,0.743445,250.000000,0.759333,0.224626,0.004101,117755964.000000,117751687.000000 chr7 120917409 120917579 ME_245,ME_263,ME_239,ME_270|120917494.474908,33.152635,51.660889,0.833096,25.073933,0.281495,0.000785,0.000703,120922180.000000,120914408.000000 chr7 120918748 120918918 ME_245,ME_263,ME_239,ME_270|120918833.433981,36.121116,48.484890,0.083534,44.811349,0.702155,0.000801,0.000724,120922180.000000,120914408.000000 chr7 123170440 123171001 ME_255|123170721.155860,93.964776,186.561826,0.576104,148.033644,0.813131,0.108447,0.019744,123172885.000000,123168473.000000 chr7 126563961 126564091 ME_261|126564026.927998,27.657862,37.281521,0.093653,58.522213,0.994306,0.001131,0.001171,126567355.000000,126561878.000000 chr7 126591471 126591824 ME_256|126591648.294253,61.174284,115.152102,0.355395,221.224829,0.930533,0.020037,0.016958,126594264.000000,126589358.000000 chr7 126795333 126795657 ME_267|126795495.713083,62.475035,99.441516,0.282917,106.088622,0.967610,0.006500,0.007097,126798100.000000,126793612.000000 chr7 130390096 130390157 ME_242|130390127.106998,10.815298,20.000000,0.989743,9.942020,0.999475,0.000106,0.000105,130392205.000000,130386653.000000 chr7 142385495 142385765 ME_240,ME_257|142385630.321328,51.709283,83.491946,0.239713,44.771661,0.316170,0.001562,0.097819,142391110.000000,142383488.000000 chr7 142387767 142387943 ME_240,ME_257|142387855.489826,34.529844,53.001743,0.168481,33.058935,0.571771,0.001663,0.002320,142391110.000000,142383488.000000 chr7 143459959 143460342 ME_253|143460150.603394,67.102655,124.491596,0.376315,135.264935,0.287633,0.004155,0.695769,143462575.000000,143457938.000000 chr7 143531371 143531731 ME_254|143531551.434422,63.810747,116.545820,0.353673,39.397105,0.943034,0.011260,0.011924,143534290.000000,143529458.000000 chr8 7392088 7392518 ME_286|7392303.311808,74.646010,140.375854,0.406034,250.000000,0.906257,0.018387,0.020651,7394664.000000,7390012.000000 chr8 68899235 68899574 ME_278|68899405.370277,59.627190,109.913485,0.656259,9.569056,0.476446,0.502820,0.005183,68901444.000000,68896672.000000 chr8 68904260 68904871 ME_284|68904565.889390,175.467969,129.932578,0.869940,250.000000,0.391056,0.606195,0.000691,68906994.000000,68901817.000000 chr8 73510610 73510959 ME_273|73510784.841480,61.177890,113.548734,0.352419,11.546719,0.943618,0.011134,0.011847,73513539.000000,73508722.000000 chr8 83170821 83170991 ME_280|83170906.075192,51.939912,33.039657,0.022854,113.205222,0.998780,0.000247,0.000256,83174244.000000,83168707.000000 chr8 94704039 94704144 ME_279|94704092.063628,23.886868,28.510525,0.060310,28.516979,0.996582,0.000683,0.000686,94707114.000000,94702012.000000 chr8 105172435 105172527 ME_275|105172481.126050,19.762983,26.274732,0.947234,13.394269,0.996980,0.000668,0.000588,105174579.000000,105169057.000000 chr8 105383373 105383753 ME_277|105383563.662778,66.271449,123.662062,0.626456,16.680329,0.924975,0.015152,0.019485,105385644.000000,105380812.000000 chr8 109839045 109839430 ME_272|109839237.687585,66.957766,125.380451,0.623314,16.250927,0.907996,0.037366,0.013660,109841304.000000,109836547.000000 chr8 110842292 110842724 ME_283|110842508.815707,75.034081,141.011184,0.408546,15.731533,0.900113,0.019666,0.021224,110844864.000000,110840512.000000 chr8 111062475 111062587 ME_274|111062531.083905,22.611770,33.432146,0.941555,23.380226,0.996657,0.000707,0.000659,111064643.000000,111059137.000000 chr8 121579235 121579391 ME_282|121579313.206657,31.356797,46.545383,0.144822,27.038780,0.989040,0.002437,0.002486,121582614.000000,121577932.000000 chr8 122359594 122359925 ME_276|122359760.226200,58.159335,107.169393,0.661645,16.075079,0.937512,0.023647,0.009710,122361849.000000,122356866.000000 chr8 123555843 123555923 ME_281,ME_285|123555883.527876,19.738319,20.000000,0.020467,34.253469,0.641276,0.000137,0.099492,123560243.000000,123553882.000000 chr8 123557562 123557656 ME_281,ME_285|123557609.110097,22.660514,24.330305,0.048228,45.159593,0.257929,0.000137,0.000208,123560243.000000,123553882.000000 chr9 40803135 40803985 ME_290|40803560.394466,16.514898,408.243250,0.994476,9.931299,0.999593,0.000184,0.000056,40805786.000000,40800309.000000 chr9 62774394 62774796 ME_289|62774595.288288,69.590256,131.344915,0.612730,250.000000,0.923831,0.016144,0.015125,62776885.000000,62772219.000000 chr9 65202024 65202099 ME_292|65202062.099195,16.772551,20.791898,0.004915,249.971350,0.999750,0.000050,0.000051,65205296.000000,65199729.000000 chr9 67050288 67050545 ME_288|67050416.562501,46.698040,81.810352,0.727263,27.787703,0.965438,0.006326,0.010960,67051960.000000,67047324.000000 chr9 70554368 70554441 ME_287|70554404.907769,16.360768,20.000000,0.987650,249.968826,0.999362,0.000130,0.000129,70556516.000000,70551174.000000 chr9 83938514 83938972 ME_293|83938743.671647,79.741997,148.968159,0.452921,250.000000,0.804547,0.128498,0.017855,83941046.000000,83936454.000000 chr9 124256038 124256723 ME_291|124256380.985094,190.161871,152.380109,0.819913,175.578630,0.221715,0.776251,0.000518,124258796.000000,124253394.000000 chrX 4018039 4018359 ME_298|4018199.502875,57.259250,102.620581,0.668630,12.843429,0.953999,0.009889,0.009028,4020284.000000,4015272.000000 chrX 7306718 7307101 ME_304|7306909.959338,72.471535,118.770755,0.411414,1.666303,0.927433,0.014153,0.015954,7309274.000000,7304967.000000 chrX 8092479 8092874 ME_299|8092676.770236,68.740234,129.006156,0.615006,9.859049,0.922732,0.016506,0.015190,8094734.000000,8090262.000000 chrX 21680823 21680891 ME_302|21680857.088465,13.945697,20.000000,0.001143,249.997312,0.999943,0.000011,0.000012,21684089.000000,21678522.000000 chrX 36080385 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chrX 103672393 103672468 ME_294|103672431.417132,17.447734,20.000000,0.989400,249.983806,0.999455,0.000111,0.000109,103674659.000000,103669197.000000 chrX 104524530 104524945 ME_309|104524737.954956,72.043940,135.731335,0.402831,54.050551,0.900853,0.027034,0.019842,104527259.000000,104522637.000000 chrX 112836184 112836566 ME_297|112836375.333143,66.590605,124.626956,0.623675,13.341567,0.928991,0.015329,0.013920,112838444.000000,112833656.000000 chrX 121732949 121733200 ME_305|121733074.929256,45.891484,79.318011,0.269028,12.686906,0.971535,0.005625,0.005965,121736174.000000,121730981.000000 chrX 129513927 129514258 ME_312|129514093.088135,58.397233,107.467517,0.338148,13.754771,0.950061,0.009822,0.010651,129516989.000000,129512006.000000 chrX 129903898 129904152 ME_308|129904025.403431,46.834191,80.474408,0.269491,16.693223,0.972068,0.005533,0.005802,129907124.000000,129901931.000000 chrX 170001148 170001649 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