#---------------------------------------------------- #Date Time : 05/11/2016 21:13:55 #-N : SRR935121 #-i : #-j : #-ij : /Users/azofeifa/bidirectional_hits_all/bedgraph_files_mouse/SRR935121.fastqbowtie2.sorted.BedGraph #-k : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/SRR935121-1_prelim_bidir_hits.bed #-o : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/ #-ns : 100 #-br : 15 #-bct : 1.0 #-elon : 0 #-pad : 2000 #-minK : 1 #-maxK : 1 #-ms_pen : 1 #-mi : 2000 #-ct : 0.0001 #-rounds : 32 #-ALPHA_0 : 10 #-BETA_0 : 10 #-BETA_1 : 100 #-ALPHA_2 : 1 #-ALPHA_3 : 100 #---------------------------------------------------- chr1 24611809 24612473 ME_4|24612141.702827,167.519741,164.264407,0.706201,250.000000,0.635117,0.347353,0.004392,24614337.000000,24609745.000000 chr1 46076375 46076447 ME_5|46076411.288569,15.721809,20.000000,0.010466,249.973123,0.999443,0.000107,0.000130,46079622.000000,46074070.000000 chr1 46853193 46853642 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ME_109|128249738.661858,66.719452,124.372062,0.374909,17.899181,0.929965,0.013730,0.015114,128252448.000000,128247646.000000 chr8 22060223 22060689 ME_116|22060456.147077,81.357865,151.643876,0.570704,250.000000,0.864935,0.045025,0.022713,22062737.000000,22058280.000000 chr8 25810345 25810764 ME_117|25810555.337253,73.024227,136.604442,0.393968,21.424853,0.897707,0.016373,0.036799,25812872.000000,25808550.000000 chr8 85112103 85112195 ME_119|85112149.399940,26.315138,20.000000,0.022715,206.838853,0.998804,0.000222,0.000309,85115402.000000,85109850.000000 chr8 95807191 95807652 ME_115|95807422.033313,80.647914,150.082585,0.422447,20.704953,0.880082,0.023334,0.026581,95809682.000000,95805450.000000 chr8 99068252 99068577 ME_112|99068415.167248,58.895631,103.454370,0.647353,1.093909,0.949426,0.010860,0.009928,99070487.000000,99065610.000000 chr8 106210870 106211100 ME_111|106210985.065029,42.431319,72.579218,0.759847,64.442720,0.973963,0.007999,0.004850,106213142.000000,106207875.000000 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