#---------------------------------------------------- #Date Time : 05/11/2016 21:19:53 #-N : SRR935124 #-i : #-j : #-ij : /Users/azofeifa/bidirectional_hits_all/bedgraph_files_mouse/SRR935124.fastqbowtie2.sorted.BedGraph #-k : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/SRR935124-1_prelim_bidir_hits.bed #-o : /Users/azofeifa/bidirectional_hits_all/EMG_out_files_mouse/ #-ns : 100 #-br : 15 #-bct : 1.0 #-elon : 0 #-pad : 2000 #-minK : 1 #-maxK : 1 #-ms_pen : 1 #-mi : 2000 #-ct : 0.0001 #-rounds : 32 #-ALPHA_0 : 10 #-BETA_0 : 10 #-BETA_1 : 100 #-ALPHA_2 : 1 #-ALPHA_3 : 100 #---------------------------------------------------- chr1 24611023 24612862 ME_17|24611942.870584,284.951657,634.813157,0.990478,250.000000,0.999658,0.000077,0.000068,24614530.000000,24608978.000000 chr1 34434838 34434933 ME_33|34434885.982401,19.570875,28.239957,0.027631,28.108794,0.998469,0.000328,0.000328,34438360.000000,34432748.000000 chr1 36697435 36698098 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chr19 46018187 46018545 ME_660|46018366.746920,62.495902,116.564800,0.359743,250.000000,0.932045,0.021585,0.012171,46021058.000000,46016016.000000 chr19 46375710 46376447 ME_614|46376078.680386,167.021429,201.354105,0.360392,250.000000,0.820985,0.010262,0.138377,46378223.000000,46373691.000000 chr19 46522693 46523114 ME_641|46522903.973732,76.477785,134.145198,0.659410,201.279878,0.895603,0.065879,0.010183,46525223.000000,46520211.000000 chr19 46893358 46893788 ME_669|46893573.386837,67.741612,147.584245,0.557713,250.000000,0.902994,0.023130,0.037569,46895843.000000,46891431.000000 chr19 47090469 47090923 ME_682|47090696.495324,74.092157,152.677366,0.505317,49.103144,0.877975,0.047094,0.032424,47092883.000000,47088531.000000 chr19 47731248 47731694 ME_622|47731471.436228,73.787408,148.976211,0.597276,250.000000,0.832510,0.104926,0.017714,47733833.000000,47729001.000000 chr19 53390590 53391032 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ME_685|22745050.713029,12.387415,20.000000,0.000027,154.648250,0.999999,0.000000,0.000000,22747818.000000,22742791.000000 chr2 23039919 23040473 ME_729|23040196.209274,92.671308,184.227186,0.444776,24.683332,0.611283,0.026079,0.300539,23042493.000000,23038096.000000 chr2 23155762 23156307 ME_725|23156034.777463,94.517023,177.907717,0.558833,118.632726,0.496406,0.469959,0.011564,23158308.000000,23153656.000000 chr2 25259026 25259361 ME_736|25259193.601503,56.346348,111.059998,0.340402,11.739783,0.930378,0.018678,0.026789,25262058.000000,25257061.000000 chr2 25272398 25272660 ME_686|25272529.416916,47.124448,84.005576,0.736838,22.221893,0.956242,0.007524,0.020707,25273878.000000,25269376.000000 chr2 26929330 26929717 ME_687,ME_782|26929523.753884,65.348821,128.314891,0.354652,37.265498,0.800825,0.012119,0.022253,26932143.000000,26927446.000000 chr2 26929990 26930634 ME_687,ME_782|26930312.587546,124.255314,197.769857,0.489759,170.697833,0.050619,0.012808,0.043462,26932143.000000,26927446.000000 chr2 27539857 27540003 ME_790|27539930.492729,30.621093,42.735553,0.150951,22.091938,0.920754,0.002472,0.071968,27543228.000000,27537811.000000 chr2 29826792 29827380 ME_759|29827086.499962,99.181528,194.714000,0.537824,250.000000,0.753063,0.118930,0.074376,29829063.000000,29824771.000000 chr2 30061910 30062210 ME_684|30062060.494173,51.592183,98.197067,0.705091,15.409297,0.767887,0.187570,0.028099,30063918.000000,30058921.000000 chr2 30133684 30134237 ME_785|30133961.253452,90.814566,185.633158,0.441297,250.000000,0.736246,0.076881,0.125445,30136248.000000,30131611.000000 chr2 30472558 30473124 ME_787|30472841.452954,96.662304,186.354446,0.424614,250.000000,0.387164,0.010370,0.573733,30475248.000000,30470475.000000 chr2 32961876 32962302 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ME_735|168207475.858219,90.755953,151.023177,0.391252,250.000000,0.742607,0.013804,0.211350,168209988.000000,168205111.000000 chr2 168311184 168311470 ME_786|168311327.477810,53.888034,88.684017,0.232738,208.839669,0.978358,0.006304,0.004066,168314328.000000,168308986.000000 chr2 168782542 168783025 ME_802|168782783.700863,84.249347,157.188965,0.431773,21.873336,0.821197,0.060287,0.043373,168785043.000000,168780721.000000 chr2 175067984 175068483 ME_714|175068234.015277,79.895315,169.877574,0.377755,27.706492,0.833664,0.012684,0.115599,175070688.000000,175066141.000000 chr2 175077858 175078378 ME_796|175078118.478628,86.902413,172.932710,0.390057,250.000000,0.863489,0.014832,0.082025,175080153.000000,175075861.000000 chr2 179976560 179976999 ME_689|179976779.728661,75.050833,144.246366,0.593087,71.462474,0.823194,0.024251,0.102403,179978568.000000,179974186.000000 chr2 180711651 180711824 ME_789,ME_703|180711738.198817,48.784792,37.571400,0.947584,110.392200,0.904124,0.000571,0.027130,180716103.000000,180708361.000000 chr2 180712924 180713225 ME_789,ME_703|180713075.368748,53.391348,97.125098,0.313562,16.335540,0.063440,0.000558,0.001002,180716103.000000,180708361.000000 chr2 180902771 180903410 ME_784|180903090.724939,119.631050,199.962875,0.402510,174.853949,0.394572,0.007981,0.573505,180905358.000000,180900916.000000 chr2 181287445 181287913 ME_763|181287679.701539,77.648777,156.631520,0.381829,250.000000,0.866350,0.047395,0.054588,181290348.000000,181285291.000000 chr2 181917197 181917519 ME_722|181917358.318465,9.920578,150.791407,0.999587,82.128155,0.977839,0.022145,0.000004,181919628.000000,181914031.000000 chr2 181927891 181928240 ME_711,ME_702|181928065.913442,85.046406,89.104428,0.901742,163.041422,0.134069,0.000333,0.000164,181931238.000000,181924876.000000 chr2 181928825 181929084 ME_711,ME_702|181928954.862279,88.335393,41.452185,0.979614,204.815379,0.824701,0.039579,0.000172,181931238.000000,181924876.000000 chr3 5859647 5860417 ME_860|5860032.631443,9.340971,375.312608,0.999983,186.675679,0.999999,0.000000,0.000000,5862691.000000,5857034.000000 chr3 6346433 6346974 ME_859|6346703.899447,93.678421,176.778144,0.544055,250.000000,0.847232,0.032386,0.036368,6349051.000000,6344534.000000 chr3 8246419 8246497 ME_897|8246458.871899,19.089471,20.004764,0.008364,55.566919,0.365010,0.000017,0.634924,8249731.000000,8244254.000000 chr3 19628181 19628634 ME_834|19628407.760757,142.659944,83.980222,0.814968,250.000000,0.999959,0.000009,0.000009,19630891.000000,19625639.000000 chr3 21052158 21052283 ME_890|21052221.222637,26.902706,35.841528,0.109462,31.485817,0.991359,0.003049,0.001430,21055651.000000,21050084.000000 chr3 30601197 30601389 ME_818|30601293.745853,40.627208,55.453508,0.841915,123.199845,0.987385,0.003339,0.002443,30603526.000000,30598034.000000 chr3 30792703 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chr3 65470326 65470709 ME_832|65470518.154135,69.708781,121.835433,0.607348,5.248237,0.927624,0.015837,0.014135,65472615.000000,65467769.000000 chr3 68492990 68493463 ME_881|68493226.607285,88.896146,147.636026,0.366464,95.995267,0.830475,0.076928,0.067711,68495851.000000,68491004.000000 chr3 69005870 69006594 ME_879|69006232.785120,160.160816,201.660365,0.574906,250.000000,0.471182,0.267054,0.225550,69008416.000000,69003944.000000 chr3 79591370 79591928 ME_849|79591649.357603,93.887994,185.356548,0.519067,250.000000,0.679146,0.055341,0.224527,79594051.000000,79589204.000000 chr3 86142477 86142736 ME_839|86142607.327029,49.927907,79.540947,0.668329,108.942158,0.458504,0.353081,0.184300,86144881.000000,86139854.000000 chr3 86774497 86775050 ME_886|86774773.969835,77.428611,199.133298,0.385232,250.000000,0.847052,0.012583,0.107455,86776876.000000,86772464.000000 chr3 87905653 87906111 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chr3 89176835 89177550 ME_862|89177193.361580,212.688322,144.732870,0.862498,250.000000,0.970978,0.021781,0.001872,89179561.000000,89174159.000000 chr3 89397057 89397419 ME_833|89397238.596274,63.086097,117.820142,0.654626,250.000000,0.955725,0.009906,0.009370,89399611.000000,89394509.000000 chr3 89411773 89412344 ME_866|89412058.977676,129.561797,156.352029,0.451412,50.731490,0.913345,0.017728,0.027450,89414161.000000,89409914.000000 chr3 89417801 89418229 ME_910|89418015.521753,71.606143,142.710710,0.357268,56.559809,0.801991,0.134188,0.034093,89420941.000000,89415854.000000 chr3 90079087 90079623 ME_857,ME_846|90079355.543712,94.723673,173.220398,0.541699,250.000000,0.134981,0.012745,0.006533,90082741.000000,90077369.000000 chr3 90080412 90080805 ME_857,ME_846|90080609.202699,67.037268,129.227354,0.627384,34.214803,0.442685,0.358301,0.006468,90082741.000000,90077369.000000 chr3 90176850 90177087 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ME_1357|16596737.897825,81.108767,158.311753,0.421910,15.887614,0.845773,0.031131,0.056367,16599115.000000,16594643.000000 chr7 16771010 16771100 ME_1253|16771055.921747,21.999129,22.994104,0.954889,239.906310,0.943995,0.054126,0.000475,16773265.000000,16767788.000000 chr7 19002379 19002973 ME_1317|19002676.512876,92.590242,204.884093,0.573118,250.000000,0.840220,0.059502,0.033664,19004995.000000,19000478.000000 chr7 19033453 19033862 ME_1422|19033657.657929,71.905369,132.639373,0.396745,11.217430,0.833361,0.106384,0.015551,19036180.000000,19031558.000000 chr7 19085694 19086070 ME_1338|19085882.306816,65.511014,122.192829,0.680808,132.033272,0.771724,0.200092,0.008022,19088125.000000,19082828.000000 chr7 19119684 19120142 ME_1287|19119913.734835,77.946171,150.843217,0.586541,10.782310,0.856321,0.052554,0.031259,19122025.000000,19117268.000000 chr7 19131079 19131785 ME_1337|19131432.647007,190.093039,163.022474,0.653079,250.000000,0.932121,0.028555,0.009867,19133905.000000,19128788.000000 chr7 19395666 19396232 ME_1302|19395949.490791,96.070202,186.650860,0.539198,29.269158,0.293067,0.645856,0.017901,19398100.000000,19393673.000000 chr7 19573514 19574203 ME_1364|19573858.820794,130.244333,214.472644,0.512451,250.000000,0.580945,0.016318,0.365728,19576240.000000,19571768.000000 chr7 19604585 19604968 ME_1441|19604776.948260,72.168306,119.331705,0.357824,11.304093,0.856318,0.009944,0.108403,19607575.000000,19602668.000000 chr7 19716154 19717058 ME_1415|19716606.816414,268.600958,183.498264,0.350253,250.000000,0.714580,0.006574,0.260086,19719190.000000,19714178.000000 chr7 20010009 20010381 ME_1366|20010195.510191,65.076129,121.048365,0.368089,18.808248,0.929041,0.017936,0.014671,20013100.000000,20008418.000000 chr7 24300831 24301328 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ME_1354|27361769.505138,81.746806,153.658078,0.464843,175.051300,0.615710,0.022490,0.309672,27363985.000000,27359543.000000 chr7 27689124 27689469 ME_1264|27689296.741660,65.149930,107.477305,0.683186,220.181930,0.958159,0.008844,0.009773,27691630.000000,27686438.000000 chr7 28372957 28373036 ME_1257|28372996.538578,19.486658,20.000000,0.977495,30.507708,0.999045,0.000197,0.000197,28375120.000000,28369508.000000 chr7 28740166 28740632 ME_1319|28740399.570113,82.926989,150.423066,0.588045,250.000000,0.882902,0.021003,0.039787,28742755.000000,28737998.000000 chr7 28793979 28794166 ME_1410|28794072.932260,35.708298,57.427820,0.180144,21.676290,0.984590,0.003986,0.003254,28797385.000000,28791938.000000 chr7 28961862 28962555 ME_1356|28962209.048070,132.605956,213.535492,0.461195,250.000000,0.302417,0.024815,0.635777,28964530.000000,28959998.000000 chr7 29158854 29159458 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ME_1330,ME_1447|109518988.468584,89.615065,268.420106,0.553588,201.874184,0.185612,0.337192,0.032352,109524475.000000,109516598.000000 chr7 109986104 109986713 ME_1449|109986408.573900,98.319892,206.236596,0.496407,140.184215,0.654189,0.066258,0.216776,109988530.000000,109984223.000000 chr7 110060001 110060200 ME_1373|110060101.324048,16.451052,82.976616,0.003118,249.481445,0.998095,0.001780,0.000034,110063335.000000,110057693.000000 chr7 111082980 111083435 ME_1376|111083208.126382,78.700020,148.793753,0.480071,209.167026,0.385393,0.012336,0.576129,111085555.000000,111080887.000000 chr7 113326214 113326660 ME_1279|113326437.188069,72.603524,150.506108,0.605689,250.000000,0.874077,0.060838,0.020246,113328789.000000,113324048.000000 chr7 116093115 116093604 ME_1414,ME_1361|116093359.963722,94.036834,150.258013,0.353351,75.164760,0.667183,0.008318,0.018716,116096439.000000,116091248.000000 chr7 116094013 116094600 ME_1414,ME_1361|116094306.839433,103.811748,189.433673,0.456219,188.192031,0.217563,0.008653,0.034882,116096439.000000,116091248.000000 chr7 116355977 116356495 ME_1315|116356236.795936,92.341946,166.713606,0.591997,231.736383,0.903008,0.022497,0.018669,116358550.000000,116353853.000000 chr7 116452404 116452806 ME_1417|116452605.317517,69.889229,131.254517,0.393332,104.585596,0.919134,0.015950,0.017180,116455255.000000,116450393.000000 chr7 118116103 118116462 ME_1433|118116283.010364,60.035687,119.632477,0.335418,117.958194,0.195476,0.001888,0.797048,118119039.000000,118114012.000000 chr7 118129539 118130319 ME_1382|118129929.327492,117.002168,272.950258,0.413727,250.000000,0.903544,0.006194,0.073964,118132585.000000,118127453.000000 chr7 120754334 120754445 ME_1389|120754390.018177,35.460103,20.000000,0.004628,249.994152,0.999762,0.000047,0.000051,120757675.000000,120752033.000000 chr7 120835705 120835777 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