Downloads | available data for DBNascent samples

Metadata

Full database metadata, available as a tab-delimited text file.
Metadata split by dataset is also available on dataset detail pages (see Datasets table).

Zenodo dataset

Our processed results are accumulated in Zenodo dataset 14519113.

Sample and dataset-specific data files

Each sample generally has the following data files available:

• Visualization files: TDF files for viewing in IGV (all organisms)
• Gene counts: tab-delimited text files (human, mouse, fly)
• Tfit bidirectional calls: BED files of coordinates (human, mouse)
• dREG bidirectional calls: BED files of coordinates (human, mouse)
• Read counts over organism-merged bidirectional calls: tab-delimited text files (human, mouse)

Sample files are available on each sample detail page (click on individual sample names from the Samples table or from search results).
In most cases all sample files within a dataset have been accumulated into ZIP archives, available on dataset detail pages (see Datasets table).
Sample-based read counts and bidirectional calls are also consolidated below for all human, mouse, and fly samples in the database (see below: Read counts by sample, Bidirectional calls by sample).

Processed database-wide bidirectionals

Bidirectionals were called on individual human and mouse samples, then merged within individual datasets by cell type and then between cell types (see below, Merged bidirectional calls by dataset).
Calls were then merged across all datasets by organism (see below, Accumulated merged bidirectional calls).