dbNascent MySQL schema


Database field types (alphabetical by field)

Field name Field type
atac_seq Boolean
avg_fold_cov Float
bbmap_version Character
bedtools_version Character
bedtools_version Character
bidirflow_date Date
bidirflow_version Character
boost_version Character
cds_rpk Float
cell_origin_type Character
cell_type Character
chip_seq Boolean
clone_individual Character
conc_intens Character
condition_type Character
construct Character
control_experimental Character
curator1 Character
curator2 Character
db_term Character
disease Boolean
distinct_tenmillion_prop Float
doi Character
downfile_pipeline_date Date
downfile_version Character
dreg_avail Boolean
dreg_bidir_gc Float
dreg_date Date
dreg_master_merge_incl Boolean
dreg_postprocess_date Date
dreg_version Character
duplication_picard Float
duration Integer
duration_unit Character
end_time Integer
exint_ratio Float
fastqc_version Character
fcbidir_avail Boolean
fcbidir_date Date
fcgene_avail Boolean
fcgene_date Date
first_author Character
fstitch_version Character
full_citation Character
gcc_version Character
gcc_version Character
genome_bases Big Integer
genome_build Character
genome_prop_cov Float
genotype Character
geo Character
hisat2_version Character
igvtools_version Character
intron_rpk Float
Field name Field type
java_version Character
last_author Character
library Character
map_prop Float
mapped_strandedness Character
mpich_version Character
mpich_version Character
multi_map Integer
nascentflow_date Date
nascentflow_redo_date Date
nascentflow_version Character
nextflow_version Character
nextflow_version Character
notes Character
num_dreg_bidir Integer
num_dreg_bidir_exonic Integer
num_dreg_bidir_intergenic Integer
num_dreg_bidir_intronic Integer
num_dreg_bidir_promoter Integer
num_tfit_bidir Integer
num_tfit_bidir_exonic Integer
num_tfit_bidir_intergenic Integer
num_tfit_bidir_intronic Integer
num_tfit_bidir_promoter Integer
numpy_version Character
olddb_general_cell_type Character
olddb_have_bigwig Boolean
olddb_have_mdscore Boolean
olddb_have_tfit Boolean
olddb_organism Character
olddb_paper_name Character
olddb_protocol Character
olddb_sample_equiv Character
olddb_specific_cell_type Character
olddb_srr Character
olddb_tissue Character
olddb_treated Boolean
olddb_treatment Character
openmpi_version Character
organism Character
other_seq Boolean
other_sr_data Boolean
outlier Boolean
paper_name Character
paper_nro_score Float
paper_qc_score Float
picard_date Date
picard_dups_version Character
picard_gc_version Character
pipeline_hash Character
pipeline_hash Character
pipeline_revision_hash Character
pipeline_revision_hash Character
preseq_date Date
Field name Field type
preseq_version Character
processing_notes Character
protocol Character
published Boolean
python_version Character
r_version Character
raw_read_depth Integer
raw_read_length Integer
raw_strandedness Character
rcomp Boolean
replicate Character
rna_seq Boolean
rseqc_cds Integer
rseqc_date Date
rseqc_five_utr Integer
rseqc_intron Integer
rseqc_tags Integer
rseqc_three_utr Integer
rseqc_version Character
rsubread_version Character
sample_name Character
sample_nro_score Integer
sample_qc_score Integer
sample_type Character
samtools_version Character
samtools_version Character
search_field Character
search_term Character
seqkit_version Character
single_map Integer
single_paired Character
spikein Character
sratools_version Character
srp Character
srr Character
start_time Integer
strain Character
tdf_avail Boolean
tfit_avail Boolean
tfit_bidir_gc Float
tfit_date Date
tfit_master_merge_incl Boolean
tfit_prelim_date Date
tfit_version Character
three_dim_seq Boolean
time_unit Character
timecourse Boolean
tissue Character
tissue_description Character
treatment Character
trim_read_depth Integer
unusable Boolean
wildtype_untreated Boolean
year Integer