Database field types (alphabetical by field)
Field name | Field type |
atac_seq | Boolean |
avg_fold_cov | Float |
bbmap_version | Character |
bedtools_version | Character |
bedtools_version | Character |
bidirflow_date | Date |
bidirflow_version | Character |
boost_version | Character |
cds_rpk | Float |
cell_origin_type | Character |
cell_type | Character |
chip_seq | Boolean |
clone_individual | Character |
conc_intens | Character |
condition_type | Character |
construct | Character |
control_experimental | Character |
curator1 | Character |
curator2 | Character |
db_term | Character |
disease | Boolean |
distinct_tenmillion_prop | Float |
doi | Character |
downfile_pipeline_date | Date |
downfile_version | Character |
dreg_avail | Boolean |
dreg_bidir_gc | Float |
dreg_date | Date |
dreg_master_merge_incl | Boolean |
dreg_postprocess_date | Date |
dreg_version | Character |
duplication_picard | Float |
duration | Integer |
duration_unit | Character |
end_time | Integer |
exint_ratio | Float |
fastqc_version | Character |
fcbidir_avail | Boolean |
fcbidir_date | Date |
fcgene_avail | Boolean |
fcgene_date | Date |
first_author | Character |
fstitch_version | Character |
full_citation | Character |
gcc_version | Character |
gcc_version | Character |
genome_bases | Big Integer |
genome_build | Character |
genome_prop_cov | Float |
genotype | Character |
geo | Character |
hisat2_version | Character |
igvtools_version | Character |
intron_rpk | Float |
Field name | Field type |
java_version | Character |
last_author | Character |
library | Character |
map_prop | Float |
mapped_strandedness | Character |
mpich_version | Character |
mpich_version | Character |
multi_map | Integer |
nascentflow_date | Date |
nascentflow_redo_date | Date |
nascentflow_version | Character |
nextflow_version | Character |
nextflow_version | Character |
notes | Character |
num_dreg_bidir | Integer |
num_dreg_bidir_exonic | Integer |
num_dreg_bidir_intergenic | Integer |
num_dreg_bidir_intronic | Integer |
num_dreg_bidir_promoter | Integer |
num_tfit_bidir | Integer |
num_tfit_bidir_exonic | Integer |
num_tfit_bidir_intergenic | Integer |
num_tfit_bidir_intronic | Integer |
num_tfit_bidir_promoter | Integer |
numpy_version | Character |
olddb_general_cell_type | Character |
olddb_have_bigwig | Boolean |
olddb_have_mdscore | Boolean |
olddb_have_tfit | Boolean |
olddb_organism | Character |
olddb_paper_name | Character |
olddb_protocol | Character |
olddb_sample_equiv | Character |
olddb_specific_cell_type | Character |
olddb_srr | Character |
olddb_tissue | Character |
olddb_treated | Boolean |
olddb_treatment | Character |
openmpi_version | Character |
organism | Character |
other_seq | Boolean |
other_sr_data | Boolean |
outlier | Boolean |
paper_name | Character |
paper_nro_score | Float |
paper_qc_score | Float |
picard_date | Date |
picard_dups_version | Character |
picard_gc_version | Character |
pipeline_hash | Character |
pipeline_hash | Character |
pipeline_revision_hash | Character |
pipeline_revision_hash | Character |
preseq_date | Date |
Field name | Field type |
preseq_version | Character |
processing_notes | Character |
protocol | Character |
published | Boolean |
python_version | Character |
r_version | Character |
raw_read_depth | Integer |
raw_read_length | Integer |
raw_strandedness | Character |
rcomp | Boolean |
replicate | Character |
rna_seq | Boolean |
rseqc_cds | Integer |
rseqc_date | Date |
rseqc_five_utr | Integer |
rseqc_intron | Integer |
rseqc_tags | Integer |
rseqc_three_utr | Integer |
rseqc_version | Character |
rsubread_version | Character |
sample_name | Character |
sample_nro_score | Integer |
sample_qc_score | Integer |
sample_type | Character |
samtools_version | Character |
samtools_version | Character |
search_field | Character |
search_term | Character |
seqkit_version | Character |
single_map | Integer |
single_paired | Character |
spikein | Character |
sratools_version | Character |
srp | Character |
srr | Character |
start_time | Integer |
strain | Character |
tdf_avail | Boolean |
tfit_avail | Boolean |
tfit_bidir_gc | Float |
tfit_date | Date |
tfit_master_merge_incl | Boolean |
tfit_prelim_date | Date |
tfit_version | Character |
three_dim_seq | Boolean |
time_unit | Character |
timecourse | Boolean |
tissue | Character |
tissue_description | Character |
treatment | Character |
trim_read_depth | Integer |
unusable | Boolean |
wildtype_untreated | Boolean |
year | Integer |