DBNascent | Samples

ERR769522 Sample ID 1416

**Data sources**
Paper identifier	Laitem2015cdk9
SRP accession	ERP009673
GEO accession
Samples	ERR769522

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	32 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	606 Kb
dREG bidirectional regions	BED file	370 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	DRB (100 microM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes	Data can be accessed on EMBL-EBI ArrayExpress
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	51
Read depth after trimming	20,424,927
Duplication proportion	0.82176
Proportion reads mapped	0.8956
Exon/intron ratio	3.09371
Unique read proportion	0.17269

**Bidirectionals**
Total # Tfit bidirectionals	6914
# Promoter Tfit bidirectionals	3052
# Intronic Tfit bidirectionals	2868
# Intergenic Tfit bidirectionals	700
Total # dREG bidirectionals	8607
# Promoter dREG bidirectionals	5304
# Intronic dREG bidirectionals	2797
# Intergenic dREG bidirectionals	878
Part of Tfit master merge?	True
Part of dREG master merge?	True