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ERR769523 Sample ID 1417
| Paper identifier | Laitem2015cdk9 |
| SRP accession | ERP009673 |
| GEO accession | |
| Samples | ERR769523 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | not noted in GEO or publication |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 forward |
| Reverse complemented? | True |
| Mapped strandedness | read1 forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 36 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 592 Kb |
| dREG bidirectional regions | BED file | 375 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HeLa |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | KM05283 (100 microM) | -30 min | 0 min | 30 min |
| Pipeline info and software versions | |
| Sample notes | Data can be accessed on EMBL-EBI ArrayExpress |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 22,740,522 |
| Duplication proportion | 0.81626 |
| Proportion reads mapped | 0.8806 |
| Exon/intron ratio | 2.60208 |
| Unique read proportion | 0.19429 |
| Total # Tfit bidirectionals | 6785 |
| # Promoter Tfit bidirectionals | 3104 |
| # Intronic Tfit bidirectionals | 2889 |
| # Intergenic Tfit bidirectionals | 624 |
| Total # dREG bidirectionals | 8731 |
| # Promoter dREG bidirectionals | 5332 |
| # Intronic dREG bidirectionals | 2933 |
| # Intergenic dREG bidirectionals | 888 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |