DBNascent | Samples

ERR769523 Sample ID 1417

**Data sources**
Paper identifier	Laitem2015cdk9
SRP	ERP009673
Samples	ERR769523

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	paired
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	36 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	592 Kb
dREG bidirectional regions	BED file	375 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	KM05283 (100 microM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes	Data can be accessed on EMBL-EBI ArrayExpress
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	51
Read depth after trimming	22,740,522
Duplication proportion	0.81626
Proportion reads mapped	0.8806
Exon/intron ratio	2.60208
Unique read proportion	0.19429

**Bidirectionals**
Total # Tfit bidirectionals	6785
# Promoter Tfit bidirectionals	3104
# Intronic Tfit bidirectionals	2889
# Intergenic Tfit bidirectionals	624
Total # dREG bidirectionals	8731
# Promoter dREG bidirectionals	5332
# Intronic dREG bidirectionals	2933
# Intergenic dREG bidirectionals	888
Part of Tfit master merge?	True
Part of dREG master merge?	True