DBNascent | Samples

ERR769524 Sample ID 1418

**Data sources**
Paper identifier	Laitem2015cdk9
SRP accession	ERP009673
GEO accession
Samples	ERR769524

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	not noted in GEO or publication
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	81 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	647 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Data can be accessed on EMBL-EBI ArrayExpress
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	51
Read depth after trimming	24,307,216
Duplication proportion	0.49587
Proportion reads mapped	0.8616
Exon/intron ratio	2.26562
Unique read proportion	0.44827

**Bidirectionals**
Total # Tfit bidirectionals	22753
# Promoter Tfit bidirectionals	8283
# Intronic Tfit bidirectionals	10097
# Intergenic Tfit bidirectionals	3884
Total # dREG bidirectionals	15007
# Promoter dREG bidirectionals	6698
# Intronic dREG bidirectionals	5628
# Intergenic dREG bidirectionals	2740
Part of Tfit master merge?	True
Part of dREG master merge?	True