DBNascent | Samples

SRM497904 Sample ID 927

**Data sources**
Paper identifier	Hah2013enhancer
SRP accession	SRP018256
GEO accession	GSE43835
Samples	SRR653421
	SRR497904
	SRR497905
	SRR497906

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	77 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	907 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	This is a resequencing tech rep for SRR497904-SRR497906, published in Hah2011rapid
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	40
Read depth after trimming	40,294,026
Duplication proportion	0.68542
Proportion reads mapped	0.6495
Exon/intron ratio	3.95778
Unique read proportion	0.51069

**Bidirectionals**
Total # Tfit bidirectionals	31725
# Promoter Tfit bidirectionals	8183
# Intronic Tfit bidirectionals	15679
# Intergenic Tfit bidirectionals	6046
Total # dREG bidirectionals	21063
# Promoter dREG bidirectionals	8622
# Intronic dREG bidirectionals	8276
# Intergenic dREG bidirectionals	3998
Part of Tfit master merge?	True
Part of dREG master merge?	True