DBNascent | Samples

SRM497907 Sample ID 928

**Data sources**
Paper identifier	Hah2013enhancer
SRP accession	SRP018256
GEO accession	GSE43835
Samples	SRR653422
	SRR497907
	SRR497908
	SRR497909
	SRR497910

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	115 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	This is a resequencing tech rep for SRR497907-SRR497910, published in Hah2011rapid
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	40
Read depth after trimming	48,714,183
Duplication proportion	0.64329
Proportion reads mapped	0.7924
Exon/intron ratio	2.64603
Unique read proportion	0.62789

**Bidirectionals**
Total # Tfit bidirectionals	41733
# Promoter Tfit bidirectionals	8756
# Intronic Tfit bidirectionals	21743
# Intergenic Tfit bidirectionals	9122
Total # dREG bidirectionals	29387
# Promoter dREG bidirectionals	8848
# Intronic dREG bidirectionals	13104
# Intergenic dREG bidirectionals	7059
Part of Tfit master merge?	True
Part of dREG master merge?	True