DBNascent | Samples

SRM497911 Sample ID 929

**Data sources**
Paper identifier	Hah2013enhancer
SRP	SRP018256
Samples	SRR653423
	SRR497911

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	108 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-10 min	0 min	10 min

**Extended notes**
Pipeline info and software versions
Sample notes	This is a resequencing tech rep for SRR497911, published in Hah2011rapid
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	40
Read depth after trimming	40,575,747
Duplication proportion	0.58981
Proportion reads mapped	0.8744
Exon/intron ratio	2.68165
Unique read proportion	0.6098

**Bidirectionals**
Total # Tfit bidirectionals	38799
# Promoter Tfit bidirectionals	9715
# Intronic Tfit bidirectionals	19412
# Intergenic Tfit bidirectionals	8063
Total # dREG bidirectionals	28099
# Promoter dREG bidirectionals	9277
# Intronic dREG bidirectionals	12296
# Intergenic dREG bidirectionals	6290
Part of Tfit master merge?	True
Part of dREG master merge?	True