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SRM497914 Sample ID 931
| Paper identifier | Hah2013enhancer |
| SRP accession | SRP018256 |
| GEO accession | GSE43835 |
| Samples | SRR653425 |
| SRR497914 | |
| SRR497915 | |
| SRR497916 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | 17-beta-estradiol (100 nM) | -40 min | 0 min | 40 min |
| Pipeline info and software versions | |
| Sample notes | This is a resequencing tech rep for SRR497914-SRR497916, published in Hah2011rapid |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 40 |
| Read depth after trimming | 46,484,517 |
| Duplication proportion | 0.6337 |
| Proportion reads mapped | 0.8465 |
| Exon/intron ratio | 3.12937 |
| Unique read proportion | 0.57874 |
| Total # Tfit bidirectionals | 41935 |
| # Promoter Tfit bidirectionals | 10035 |
| # Intronic Tfit bidirectionals | 20678 |
| # Intergenic Tfit bidirectionals | 9356 |
| Total # dREG bidirectionals | 31072 |
| # Promoter dREG bidirectionals | 9576 |
| # Intronic dREG bidirectionals | 14052 |
| # Intergenic dREG bidirectionals | 7088 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |