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SRM497917 Sample ID 932
| Paper identifier | Hah2013enhancer |
| SRP accession | SRP018256 |
| GEO accession | GSE43835 |
| Samples | SRR653426 |
| SRR497917 | |
| SRR497918 | |
| SRR497919 | |
| SRR497920 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 99 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | 17-beta-estradiol (100 nM) | -40 min | 0 min | 40 min |
| Pipeline info and software versions | |
| Sample notes | This is a resequencing tech rep for SRR497917-SRR497920, published in Hah2011rapid |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 40 |
| Read depth after trimming | 38,352,896 |
| Duplication proportion | 0.60657 |
| Proportion reads mapped | 0.8182 |
| Exon/intron ratio | 2.51513 |
| Unique read proportion | 0.58944 |
| Total # Tfit bidirectionals | 38565 |
| # Promoter Tfit bidirectionals | 7961 |
| # Intronic Tfit bidirectionals | 20169 |
| # Intergenic Tfit bidirectionals | 8509 |
| Total # dREG bidirectionals | 25477 |
| # Promoter dREG bidirectionals | 7946 |
| # Intronic dREG bidirectionals | 11602 |
| # Intergenic dREG bidirectionals | 5689 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |