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SRR065240 Sample ID 686
| Paper identifier | Escoubet-lozach2011mechanisms |
| SRP accession | SRP003475 |
| GEO accession | GSE23619 |
| Samples | SRR065240 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 30 Mb |
| Stranded gene read counts | TXT file | 907 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 390 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | peritoneal macrophage |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 34 |
| Read depth after trimming | 8,361,925 |
| Duplication proportion | 0.44418 |
| Proportion reads mapped | 0.7592 |
| Exon/intron ratio | 2.73077 |
| Unique read proportion | 0.48845 |
| Total # Tfit bidirectionals | 12958 |
| # Promoter Tfit bidirectionals | 5456 |
| # Intronic Tfit bidirectionals | 4013 |
| # Intergenic Tfit bidirectionals | 2001 |
| Total # dREG bidirectionals | 9061 |
| # Promoter dREG bidirectionals | 4665 |
| # Intronic dREG bidirectionals | 2251 |
| # Intergenic dREG bidirectionals | 1337 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |