DBNascent | Samples

SRR065240 Sample ID 686

**Data sources**
Paper identifier	Escoubet-lozach2011mechanisms
SRP accession	SRP003475
GEO accession	GSE23619
Samples	SRR065240

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	30 Mb
Stranded gene read counts	TXT file	907 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	390 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	34
Read depth after trimming	8,361,925
Duplication proportion	0.44418
Proportion reads mapped	0.7592
Exon/intron ratio	2.73077
Unique read proportion	0.48845

**Bidirectionals**
Total # Tfit bidirectionals	12958
# Promoter Tfit bidirectionals	5456
# Intronic Tfit bidirectionals	4013
# Intergenic Tfit bidirectionals	2001
Total # dREG bidirectionals	9061
# Promoter dREG bidirectionals	4665
# Intronic dREG bidirectionals	2251
# Intergenic dREG bidirectionals	1337
Part of Tfit master merge?	True
Part of dREG master merge?	True