DBNascent | Samples

SRR091798 Sample ID 1067

**Data sources**
Paper identifier	Ji2011transcriptional
SRP accession	SRP005283
GEO accession	GSE26512
Samples	SRR091798

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	58 Mb
Stranded gene read counts	TXT file	913 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	384 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	C2C12
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	76
Read depth after trimming	16,834,558
Duplication proportion	0.30411
Proportion reads mapped	0.7763
Exon/intron ratio	2.33713
Unique read proportion	0.7219

**Bidirectionals**
Total # Tfit bidirectionals	26559
# Promoter Tfit bidirectionals	6858
# Intronic Tfit bidirectionals	11502
# Intergenic Tfit bidirectionals	5081
Total # dREG bidirectionals	8906
# Promoter dREG bidirectionals	3274
# Intronic dREG bidirectionals	3249
# Intergenic dREG bidirectionals	1821
Part of Tfit master merge?	True
Part of dREG master merge?	True