DBNascent | Samples

SRR097862 Sample ID 1849

**Data sources**
Paper identifier	Min2011regulating
SRP accession	SRP005604
GEO accession	GSE27037
Samples	SRR097862

**Technical details**
QC score	4
Replicate	3
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	26 Mb
Stranded gene read counts	TXT file	906 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	341 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain	C57BL/6(f) x 129/Sv(m)
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	35
Read depth after trimming	7,745,762
Duplication proportion	0.47098
Proportion reads mapped	0.7211
Exon/intron ratio	2.52404
Unique read proportion	0.50753

**Bidirectionals**
Total # Tfit bidirectionals	13141
# Promoter Tfit bidirectionals	5160
# Intronic Tfit bidirectionals	3977
# Intergenic Tfit bidirectionals	2078
Total # dREG bidirectionals	7936
# Promoter dREG bidirectionals	4597
# Intronic dREG bidirectionals	1420
# Intergenic dREG bidirectionals	1176
Part of Tfit master merge?	True
Part of dREG master merge?	True