DBNascent | Samples

SRR097863 Sample ID 1850

**Data sources**
Paper identifier	Min2011regulating
SRP accession	SRP005604
GEO accession	GSE27037
Samples	SRR097863

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	20 Mb
Stranded gene read counts	TXT file	903 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	874 Kb
dREG bidirectional regions	BED file	234 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	MEF
Clone/Individual
Strain	C57BL/6(f) x 129/Sv(m)
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	35
Read depth after trimming	7,901,773
Duplication proportion	0.56847
Proportion reads mapped	0.6558
Exon/intron ratio	2.17553
Unique read proportion	0.40662

**Bidirectionals**
Total # Tfit bidirectionals	10347
# Promoter Tfit bidirectionals	3988
# Intronic Tfit bidirectionals	3637
# Intergenic Tfit bidirectionals	1380
Total # dREG bidirectionals	5444
# Promoter dREG bidirectionals	3353
# Intronic dREG bidirectionals	1110
# Intergenic dREG bidirectionals	533
Part of Tfit master merge?	True
Part of dREG master merge?	True