DBNascent | Samples

SRR097864 Sample ID 1851

**Data sources**
Paper identifier	Min2011regulating
SRP accession	SRP005604
GEO accession	GSE27037
Samples	SRR097864

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	22 Mb
Stranded gene read counts	TXT file	903 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	875 Kb
dREG bidirectional regions	BED file	222 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	MEF
Clone/Individual
Strain	C57BL/6(f) x 129/Sv(m)
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	35
Read depth after trimming	6,954,696
Duplication proportion	0.46245
Proportion reads mapped	0.6533
Exon/intron ratio	2.19231
Unique read proportion	0.50529

**Bidirectionals**
Total # Tfit bidirectionals	10338
# Promoter Tfit bidirectionals	3920
# Intronic Tfit bidirectionals	3633
# Intergenic Tfit bidirectionals	1517
Total # dREG bidirectionals	5156
# Promoter dREG bidirectionals	3140
# Intronic dREG bidirectionals	1049
# Intergenic dREG bidirectionals	542
Part of Tfit master merge?	True
Part of dREG master merge?	True