Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR10063529 Sample ID 1583
| Paper identifier | Linnakuosmanen2020nrf2 |
| SRP accession | SRP220198 |
| GEO accession | GSE136813 |
| Samples | SRR10063529 |
| QC score | 3 |
| Replicate | 3 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | HUVEC |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | hypoxia (1 percent O2, 5 percent CO2) | -6 hr | 0 hr | 6 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 13,235,585 |
| Duplication proportion | 0.37746 |
| Proportion reads mapped | 0.9116 |
| Exon/intron ratio | 2.40781 |
| Unique read proportion | 0.64506 |
| Total # Tfit bidirectionals | 26326 |
| # Promoter Tfit bidirectionals | 8751 |
| # Intronic Tfit bidirectionals | 11312 |
| # Intergenic Tfit bidirectionals | 6424 |
| Total # dREG bidirectionals | 20710 |
| # Promoter dREG bidirectionals | 8979 |
| # Intronic dREG bidirectionals | 8184 |
| # Intergenic dREG bidirectionals | 4264 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |