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SRR10063533 Sample ID 1587
| Paper identifier | Linnakuosmanen2020nrf2 |
| SRP accession | SRP220198 |
| GEO accession | GSE136813 |
| Samples | SRR10063533 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 57 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 716 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | HUVEC |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | hypoxia (1 percent O2, 5 percent CO2) | -6 hr | 0 hr | 6 hr |
| treatment | oxPAPC (30 g/mL) | -6 hr | 0 hr | 6 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 51,447,099 |
| Duplication proportion | 0.88385 |
| Proportion reads mapped | 0.9371 |
| Exon/intron ratio | 3.19855 |
| Unique read proportion | 0.33682 |
| Total # Tfit bidirectionals | 17081 |
| # Promoter Tfit bidirectionals | 7215 |
| # Intronic Tfit bidirectionals | 7421 |
| # Intergenic Tfit bidirectionals | 2355 |
| Total # dREG bidirectionals | 16636 |
| # Promoter dREG bidirectionals | 8866 |
| # Intronic dREG bidirectionals | 6110 |
| # Intergenic dREG bidirectionals | 2141 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |