Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR10063544 Sample ID 1594
| Paper identifier | Linnakuosmanen2020nrf2 |
| SRP accession | SRP220198 |
| GEO accession | GSE136813 |
| Samples | SRR10063544 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 75 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 968 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | CD14+ macrophage |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | growth media | -6 hr | 0 hr | 6 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 19,383,130 |
| Duplication proportion | 0.43467 |
| Proportion reads mapped | 0.9332 |
| Exon/intron ratio | 2.53846 |
| Unique read proportion | 0.66922 |
| Total # Tfit bidirectionals | 30198 |
| # Promoter Tfit bidirectionals | 11417 |
| # Intronic Tfit bidirectionals | 11929 |
| # Intergenic Tfit bidirectionals | 6475 |
| Total # dREG bidirectionals | 22372 |
| # Promoter dREG bidirectionals | 8383 |
| # Intronic dREG bidirectionals | 9202 |
| # Intergenic dREG bidirectionals | 4859 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |