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SRR10067473 Sample ID 1193
| Paper identifier | Kelly2020unpublished |
| SRP accession | SRP220334 |
| GEO accession | GSE136860 |
| Samples | SRR10067473 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 101 Mb |
| Stranded gene read counts | TXT file | 926 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | E14 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 75 |
| Read depth after trimming | 41,287,389 |
| Duplication proportion | 0.58049 |
| Proportion reads mapped | 0.8661 |
| Exon/intron ratio | 2.44323 |
| Unique read proportion | 0.59621 |
| Total # Tfit bidirectionals | 35618 |
| # Promoter Tfit bidirectionals | 8581 |
| # Intronic Tfit bidirectionals | 13205 |
| # Intergenic Tfit bidirectionals | 10316 |
| Total # dREG bidirectionals | 25176 |
| # Promoter dREG bidirectionals | 7264 |
| # Intronic dREG bidirectionals | 7869 |
| # Intergenic dREG bidirectionals | 8281 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |