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SRR10067476 Sample ID 1196
| Paper identifier | Kelly2020unpublished |
| SRP accession | SRP220334 |
| GEO accession | GSE136860 |
| Samples | SRR10067476 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 51 Mb |
| Stranded gene read counts | TXT file | 914 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 576 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | E14 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | JQ1 | -2 hr | 0 hr | 2 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 15,273,482 |
| Duplication proportion | 0.45975 |
| Proportion reads mapped | 0.7935 |
| Exon/intron ratio | 3.07904 |
| Unique read proportion | 0.55836 |
| Total # Tfit bidirectionals | 19538 |
| # Promoter Tfit bidirectionals | 5917 |
| # Intronic Tfit bidirectionals | 7298 |
| # Intergenic Tfit bidirectionals | 4018 |
| Total # dREG bidirectionals | 13376 |
| # Promoter dREG bidirectionals | 5727 |
| # Intronic dREG bidirectionals | 3677 |
| # Intergenic dREG bidirectionals | 2809 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |