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SRR10067478 Sample ID 1198
| Paper identifier | Kelly2020unpublished |
| SRP accession | SRP220334 |
| GEO accession | GSE136860 |
| Samples | SRR10067478 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 42 Mb |
| Stranded gene read counts | TXT file | 914 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 511 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | E14 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | LBH589 (50 nM) | -2 hr | 0 hr | 2 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 75 |
| Read depth after trimming | 10,248,952 |
| Duplication proportion | 0.39663 |
| Proportion reads mapped | 0.8125 |
| Exon/intron ratio | 2.80206 |
| Unique read proportion | 0.58669 |
| Total # Tfit bidirectionals | 23940 |
| # Promoter Tfit bidirectionals | 7066 |
| # Intronic Tfit bidirectionals | 8316 |
| # Intergenic Tfit bidirectionals | 5730 |
| Total # dREG bidirectionals | 11909 |
| # Promoter dREG bidirectionals | 6185 |
| # Intronic dREG bidirectionals | 2517 |
| # Intergenic dREG bidirectionals | 2250 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |