DBNascent | Samples

SRR1015584 Sample ID 1748

**Data sources**
Paper identifier	Luo2014dynamic
SRP	SRP031852
Samples	SRR1015584

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	91 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	AC16
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	43
Read depth after trimming	23,182,200
Duplication proportion	0.29563
Proportion reads mapped	0.867
Exon/intron ratio	2.07443
Unique read proportion	0.76211

**Bidirectionals**
Total # Tfit bidirectionals	45319
# Promoter Tfit bidirectionals	12366
# Intronic Tfit bidirectionals	21561
# Intergenic Tfit bidirectionals	10149
Total # dREG bidirectionals	26691
# Promoter dREG bidirectionals	8499
# Intronic dREG bidirectionals	11282
# Intergenic dREG bidirectionals	6727
Part of Tfit master merge?	True
Part of dREG master merge?	True