DBNascent | Samples

SRR1015585 Sample ID 1749

**Data sources**
Paper identifier	Luo2014dynamic
SRP	SRP031852
Samples	SRR1015585

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	80 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	AC16
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	TNF-alpha (25 ng/mL)	-10 min	0 min	10 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	38
Read depth after trimming	21,095,684
Duplication proportion	0.33488
Proportion reads mapped	0.8221
Exon/intron ratio	2.89621
Unique read proportion	0.70565

**Bidirectionals**
Total # Tfit bidirectionals	39695
# Promoter Tfit bidirectionals	14246
# Intronic Tfit bidirectionals	16697
# Intergenic Tfit bidirectionals	9068
Total # dREG bidirectionals	26312
# Promoter dREG bidirectionals	9232
# Intronic dREG bidirectionals	11115
# Intergenic dREG bidirectionals	6019
Part of Tfit master merge?	True
Part of dREG master merge?	True