DBNascent | Samples

SRR1015588 Sample ID 1752

**Data sources**
Paper identifier	Luo2014dynamic
SRP	SRP031852
Samples	SRR1015588

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	86 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1017 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	AC16
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	TNF-alpha (25 ng/mL)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	43
Read depth after trimming	21,457,631
Duplication proportion	0.28897
Proportion reads mapped	0.8718
Exon/intron ratio	1.78175
Unique read proportion	0.76103

**Bidirectionals**
Total # Tfit bidirectionals	39950
# Promoter Tfit bidirectionals	9996
# Intronic Tfit bidirectionals	19848
# Intergenic Tfit bidirectionals	9239
Total # dREG bidirectionals	23463
# Promoter dREG bidirectionals	6932
# Intronic dREG bidirectionals	10801
# Intergenic dREG bidirectionals	5671
Part of Tfit master merge?	True
Part of dREG master merge?	True