DBNascent | Samples

SRR1015589 Sample ID 1754

**Data sources**
Paper identifier	Luo2014dynamic
SRP accession	SRP031852
GEO accession	GSE51224
Samples	SRR1015589

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	81 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	AC16
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	TNF-alpha (25 ng/mL)	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	38
Read depth after trimming	19,911,846
Duplication proportion	0.31218
Proportion reads mapped	0.8448
Exon/intron ratio	2.28943
Unique read proportion	0.73859

**Bidirectionals**
Total # Tfit bidirectionals	38484
# Promoter Tfit bidirectionals	13095
# Intronic Tfit bidirectionals	16602
# Intergenic Tfit bidirectionals	8661
Total # dREG bidirectionals	24541
# Promoter dREG bidirectionals	8574
# Intronic dREG bidirectionals	10478
# Intergenic dREG bidirectionals	5396
Part of Tfit master merge?	True
Part of dREG master merge?	True