DBNascent | Samples

SRR1015591 Sample ID 1756

**Data sources**
Paper identifier	Luo2014dynamic
SRP accession	SRP031852
GEO accession	GSE51224
Samples	SRR1015591

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	236 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	AC16
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-15 min	0 min	15 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	76,671,037
Duplication proportion	0.40172
Proportion reads mapped	0.8142
Exon/intron ratio	3.02834
Unique read proportion	0.72518

**Bidirectionals**
Total # Tfit bidirectionals	57765
# Promoter Tfit bidirectionals	18267
# Intronic Tfit bidirectionals	21606
# Intergenic Tfit bidirectionals	17498
Total # dREG bidirectionals	46120
# Promoter dREG bidirectionals	10453
# Intronic dREG bidirectionals	20998
# Intergenic dREG bidirectionals	13734
Part of Tfit master merge?	True
Part of dREG master merge?	True