DBNascent | Samples

SRR10282968 Sample ID 1230

**Data sources**
Paper identifier	Komarov2020epigenetic
SRP accession	SRP225756
GEO accession	GSE138886
Samples	SRR10282968

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	52 Mb
Stranded gene read counts	TXT file	724 Kb
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	D. melanogaster
Sample type	tissue
Cell type	ovary
Clone/Individual
Strain	1.9wR x wK
Genotype	I-TG transgene knock-in +/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Heterozygous inheritance of transgene from paternal strain 1.9R; Library prep not specified - just "same as Rozhkov 2013"
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	125
Read depth after trimming	22,544,397
Duplication proportion	0.74687
Proportion reads mapped	0.7208
Exon/intron ratio	3.16596
Unique read proportion	0.28475

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False