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SRR10298308 Sample ID 1519
| Paper identifier | Li2021comprehensive |
| SRP accession | SRP226022 |
| GEO accession | GSE139004 |
| Samples | SRR10298308 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 162 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 945 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | In db until 4/19/2021 as Korkmaz2021unpublished, script names changed, but all previous documentation reflects |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 49,305,935 |
| Duplication proportion | 0.43185 |
| Proportion reads mapped | 0.9966 |
| Exon/intron ratio | 3.83663 |
| Unique read proportion | 0.79466 |
| Total # Tfit bidirectionals | 35210 |
| # Promoter Tfit bidirectionals | 15186 |
| # Intronic Tfit bidirectionals | 13573 |
| # Intergenic Tfit bidirectionals | 6353 |
| Total # dREG bidirectionals | 21505 |
| # Promoter dREG bidirectionals | 8278 |
| # Intronic dREG bidirectionals | 8169 |
| # Intergenic dREG bidirectionals | 4500 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |