DBNascent | Samples

SRR10298309 Sample ID 1520

**Data sources**
Paper identifier	Li2021comprehensive
SRP accession	SRP226022
GEO accession	GSE139004
Samples	SRR10298309

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	179 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MDA-MB-231
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	In db until 4/19/2021 as Korkmaz2021unpublished, script names changed, but all previous documentation reflects

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	59,266,310
Duplication proportion	0.47886
Proportion reads mapped	0.9969
Exon/intron ratio	4.16202
Unique read proportion	0.77173

**Bidirectionals**
Total # Tfit bidirectionals	48464
# Promoter Tfit bidirectionals	15690
# Intronic Tfit bidirectionals	19956
# Intergenic Tfit bidirectionals	12187
Total # dREG bidirectionals	34369
# Promoter dREG bidirectionals	8625
# Intronic dREG bidirectionals	15064
# Intergenic dREG bidirectionals	9787
Part of Tfit master merge?	True
Part of dREG master merge?	True