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SRR10312748 Sample ID 1489
| Paper identifier | Li2020human |
| SRP accession | SRP226233 |
| GEO accession | GSE139114 |
| Samples | SRR10312748 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | foreskin fibroblast |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | HCMV strain Towne IE2F BAC (MOI 3) | -96 hr | 0 hr | 4 day |
| treatment | dTag7 (200 nM) | -6 hr | 0 hr | 6 hr |
| Pipeline info and software versions | |
| Sample notes | HCMV strains have different genes tagged with degron |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 151 |
| Read depth after trimming | 25,042,873 |
| Duplication proportion | 0.45389 |
| Proportion reads mapped | 0.4444 |
| Exon/intron ratio | 2.92201 |
| Unique read proportion | 0.47861 |
| Total # Tfit bidirectionals | 15479 |
| # Promoter Tfit bidirectionals | 8344 |
| # Intronic Tfit bidirectionals | 5636 |
| # Intergenic Tfit bidirectionals | 1252 |
| Total # dREG bidirectionals | 5038 |
| # Promoter dREG bidirectionals | 3565 |
| # Intronic dREG bidirectionals | 1242 |
| # Intergenic dREG bidirectionals | 450 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |