DBNascent | Samples

SRR10354625 Sample ID 1022

**Data sources**
Paper identifier	Jaeger2020selective
SRP accession	SRP227189
GEO accession	GSE139462
Samples	SRR10354625

**Technical details**
QC score	1
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	D. melanogaster
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	208 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	KBM7
Clone/Individual
Strain
Genotype	Med14 dTAG-inducible degron
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Labeled as experiment MJ-17-76, mentions to only cross-compare within experiment
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	67,168,280
Duplication proportion	0.4317
Proportion reads mapped	0.8455
Exon/intron ratio	3.13512
Unique read proportion	0.72457

**Bidirectionals**
Total # Tfit bidirectionals	27187
# Promoter Tfit bidirectionals	13979
# Intronic Tfit bidirectionals	9834
# Intergenic Tfit bidirectionals	4059
Total # dREG bidirectionals	24480
# Promoter dREG bidirectionals	7690
# Intronic dREG bidirectionals	11146
# Intergenic dREG bidirectionals	4869
Part of Tfit master merge?	True
Part of dREG master merge?	True