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SRR10354627 Sample ID 1024
| Paper identifier | Jaeger2020selective |
| SRP accession | SRP227189 |
| GEO accession | GSE139462 |
| Samples | SRR10354627 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | KBM7 |
| Clone/Individual | |
| Strain | |
| Genotype | Med14 dTAG-inducible degron |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | dTAG7 (500 nM) | -2 hr | 0 hr | 2 hr |
| Pipeline info and software versions | |
| Sample notes | Labeled as experiment MJ-17-76, mentions to only cross-compare within experiment |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 82,616,710 |
| Duplication proportion | 0.48157 |
| Proportion reads mapped | 0.8305 |
| Exon/intron ratio | 2.29483 |
| Unique read proportion | 0.67437 |
| Total # Tfit bidirectionals | 20898 |
| # Promoter Tfit bidirectionals | 9601 |
| # Intronic Tfit bidirectionals | 8370 |
| # Intergenic Tfit bidirectionals | 2645 |
| Total # dREG bidirectionals | 20152 |
| # Promoter dREG bidirectionals | 6385 |
| # Intronic dREG bidirectionals | 9217 |
| # Intergenic dREG bidirectionals | 4213 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |