DBNascent | Samples

SRR1035898 Sample ID 1174

**Data sources**
Paper identifier	Kaikkonen2014control
SRP	SRP033253
Samples	SRR1035898

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	66 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	540 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Pool of at least 3 individuals; passage 5
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	48
Read depth after trimming	17,047,198
Duplication proportion	0.38229
Proportion reads mapped	0.9076
Exon/intron ratio	2.68006
Unique read proportion	0.67134

**Bidirectionals**
Total # Tfit bidirectionals	16461
# Promoter Tfit bidirectionals	6408
# Intronic Tfit bidirectionals	7385
# Intergenic Tfit bidirectionals	2713
Total # dREG bidirectionals	12545
# Promoter dREG bidirectionals	5779
# Intronic dREG bidirectionals	4987
# Intergenic dREG bidirectionals	1933
Part of Tfit master merge?	True
Part of dREG master merge?	True