DBNascent | Samples

SRR1035899 Sample ID 1175

**Data sources**
Paper identifier	Kaikkonen2014control
SRP	SRP033253
Samples	SRR1035899

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	65 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	506 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HUVEC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	VEGF-A165 (50 ng/mL)	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Pool of at least 3 individuals; passage 5
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	48
Read depth after trimming	17,956,826
Duplication proportion	0.45521
Proportion reads mapped	0.9227
Exon/intron ratio	3.07154
Unique read proportion	0.62556

**Bidirectionals**
Total # Tfit bidirectionals	14614
# Promoter Tfit bidirectionals	5527
# Intronic Tfit bidirectionals	6595
# Intergenic Tfit bidirectionals	2332
Total # dREG bidirectionals	11754
# Promoter dREG bidirectionals	5439
# Intronic dREG bidirectionals	4775
# Intergenic dREG bidirectionals	1765
Part of Tfit master merge?	True
Part of dREG master merge?	True