DBNascent | Samples

SRR1035900 Sample ID 1176

**Data sources**
Paper identifier	Kaikkonen2014control
SRP	SRP033253
Samples	SRR1035900

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	70 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	832 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	HAEC
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Pool of at least 3 individuals; passage 8
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	21,751,779
Duplication proportion	0.50683
Proportion reads mapped	0.9053
Exon/intron ratio	3.40989
Unique read proportion	0.55444

**Bidirectionals**
Total # Tfit bidirectionals	23856
# Promoter Tfit bidirectionals	10106
# Intronic Tfit bidirectionals	10026
# Intergenic Tfit bidirectionals	4253
Total # dREG bidirectionals	19349
# Promoter dREG bidirectionals	8698
# Intronic dREG bidirectionals	7984
# Intergenic dREG bidirectionals	3186
Part of Tfit master merge?	True
Part of dREG master merge?	True