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SRR10400222 Sample ID 2640
| Paper identifier | Wang2020proapoptotic |
| SRP accession | SRP228576 |
| GEO accession | GSE139928 |
| Samples | SRR10400222 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | MCF7 |
| Clone/Individual | |
| Strain | |
| Genotype | dox-inducible Pax2 (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (50 ng/mL) | -22 hr | 0 hr | 22 hr |
| treatment | hydroxytamoxifen (1 microM) | -6 hr | 0 hr | 6 hr |
| Pipeline info and software versions | |
| Sample notes | Vehicle unspecified |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 28,160,127 |
| Duplication proportion | 0.23499 |
| Proportion reads mapped | 0.7859 |
| Exon/intron ratio | 1.76367 |
| Unique read proportion | 0.80208 |
| Total # Tfit bidirectionals | 20215 |
| # Promoter Tfit bidirectionals | 7556 |
| # Intronic Tfit bidirectionals | 8891 |
| # Intergenic Tfit bidirectionals | 3081 |
| Total # dREG bidirectionals | 12721 |
| # Promoter dREG bidirectionals | 5993 |
| # Intronic dREG bidirectionals | 4793 |
| # Intergenic dREG bidirectionals | 2092 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |