DBNascent | Samples

SRR10400223 Sample ID 2641

**Data sources**
Paper identifier	Wang2020proapoptotic
SRP accession	SRP228576
GEO accession	GSE139928
Samples	SRR10400223

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	133 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	883 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype	dox-inducible Pax2 (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (50 ng/mL)	-22 hr	0 hr	22 hr
treatment	hydroxytamoxifen (1 microM)	-6 hr	0 hr	6 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Vehicle unspecified
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	51
Read depth after trimming	31,671,165
Duplication proportion	0.23076
Proportion reads mapped	0.8824
Exon/intron ratio	2.35997
Unique read proportion	0.83669

**Bidirectionals**
Total # Tfit bidirectionals	29952
# Promoter Tfit bidirectionals	12538
# Intronic Tfit bidirectionals	11871
# Intergenic Tfit bidirectionals	5492
Total # dREG bidirectionals	20242
# Promoter dREG bidirectionals	8302
# Intronic dREG bidirectionals	8083
# Intergenic dREG bidirectionals	3736
Part of Tfit master merge?	True
Part of dREG master merge?	True