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SRR1041871 Sample ID 1846
| Paper identifier | Miller2015senataxin |
| SRP accession | SRP033442 |
| GEO accession | GSE52935 |
| Samples | SRR1041871 |
| QC score | 5 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 45 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | A549 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA control |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | influenza virus strain PR8-delta-NS1 (MOI 5) | -4 hr | 0 hr | 4 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 5 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 129,766,689 |
| Duplication proportion | 0.95464 |
| Proportion reads mapped | 0.5965 |
| Exon/intron ratio | 2.31684 |
| Unique read proportion | 0.24041 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |