Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR1041873 Sample ID 1848
| Paper identifier | Miller2015senataxin |
| SRP accession | SRP033442 |
| GEO accession | GSE52935 |
| Samples | SRR1041873 |
| QC score | 5 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | A549 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA Setx |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | influenza virus strain PR8-delta-NS1 (MOI 5) | -4 hr | 0 hr | 4 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 5 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 140,980,596 |
| Duplication proportion | 0.96097 |
| Proportion reads mapped | 0.5654 |
| Exon/intron ratio | 2.61447 |
| Unique read proportion | 0.21473 |
| Total # Tfit bidirectionals | 16467 |
| # Promoter Tfit bidirectionals | 6627 |
| # Intronic Tfit bidirectionals | 6863 |
| # Intergenic Tfit bidirectionals | 2183 |
| Total # dREG bidirectionals | 7338 |
| # Promoter dREG bidirectionals | 4037 |
| # Intronic dREG bidirectionals | 2315 |
| # Intergenic dREG bidirectionals | 956 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |