DBNascent | Samples

SRR1041873 Sample ID 1848

**Data sources**
Paper identifier	Miller2015senataxin
SRP accession	SRP033442
GEO accession	GSE52935
Samples	SRR1041873

**Technical details**
QC score	5
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	45 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	316 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	A549
Clone/Individual
Strain
Genotype
Construct	siRNA Setx

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	influenza virus strain PR8-delta-NS1 (MOI 5)	-4 hr	0 hr	4 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	51
Read depth after trimming	140,980,596
Duplication proportion	0.96097
Proportion reads mapped	0.5654
Exon/intron ratio	2.61447
Unique read proportion	0.21473

**Bidirectionals**
Total # Tfit bidirectionals	16467
# Promoter Tfit bidirectionals	6627
# Intronic Tfit bidirectionals	6863
# Intergenic Tfit bidirectionals	2183
Total # dREG bidirectionals	7338
# Promoter dREG bidirectionals	4037
# Intronic dREG bidirectionals	2315
# Intergenic dREG bidirectionals	956
Part of Tfit master merge?	True
Part of dREG master merge?	True